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BaseInfo

ncRNA ID novel_osa_miR2465
Species Oryza sativa
Class miRNA
Genome position Chr5:22992258-22992429 [+]
Reference genome IRGSP-1.0
Source SRR1849774
Length 21
Mature sequence(if miRNA) 1 - GACGUGACCUACAACUUUGUA - 21
Stem-loop(if miRNA) --       C                ------------------------UAAA      UGAAUUAAAACUGUUUAGGGUCCCAAAAUAUUGUUGCA
  GACGUGA CUACAACUUUGUAGUU                            AGUUUU                                      U
  ||||||| ||||||||||||||||                            ||||||
  CUGCGCU GAUGUUGAAACAUCAA                            CAGGGU                                      G
AG       A                CUAAAAAAAAAUAAAAUUCAGUAAAAAA      UUUACAUUAAAGUUUUAAUUUUAAAGUUUUAGAUAUUU
Stem-loop sequence GACGUGACCUACAACUUUGUAGUUUAAAAGUUUUUGAAUUAAAACUGUUUAGGGUCCCAAAAUAUUGUUGCAUGUUUAUAGAUUUUGAAAUUUUAAUUUUGAAAUUACAUUUUGGGACAAAAAAUGACUUAAAAUAAAAAAAAAUCAACUACAAAGUUGUAGAUCGCGUCGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288437.1
ncRNA:21   AUGUUUCAACAUCCAGUGCAG   1
  |||||||||||||||||=|||
targets:1398   UACAAAGUUGUAGGUCAUGUC   1418

1.5 Oryza sativa Japonica Group cDNA, clone: J090034B12, full insert sequence NA coding protein psRNATarget