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BaseInfo

ncRNA ID	novel_osa_miR2460
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:27539494-27539654 [+]
Reference genome	IRGSP-1.0
Source	SRR1849774
Length	24
Mature sequence(if miRNA)	138 - AUAAGUGGUCAAACGUUGUAAUAA - 161
Stem-loop(if miRNA)	--C             A    CG C        -AA       AAAUUAUUAUUUAUUUUAUUUG   CU ACUUUAUUAUCUAUAGUAUUU    UUGCAACGUUUGA CACU  U UUAUUUAA   UUUUUUG                      UGA  U                     U    ||||||||||||| ||||  | ||||||||   |||||||                      |||  |                     A    AAUGUUGCAAACU GUGA  A AAUAAAUU   AAAAAAC                      GUU  G                     A AAU             G    AU A        AAA       ---------------------G   -- UAUUUUUUGCUUUUCAACACA
Stem-loop sequence	CUUGCAACGUUUGAACACUCGUCUUAUUUAAAAUUUUUUGAAAUUAUUAUUUAUUUUAUUUGUGACUUACUUUAUUAUCUAUAGUAUUUUAAACACAACUUUUCGUUUUUUAUGUUGGCAAAAAAAAAUUAAAUAAAAUAAGUGGUCAAACGUUGUAAUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289013.1	ncRNA:24   AAU-AAUGUUGCAAACUGGUGAAUA   1   |||-||=||||||||||||||||=| targets:3856   UUACUUGCAACGUUUGACCACUUGU   3880 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
LQ236678.1	ncRNA:24   AAU--AAUGUUGCAAACUGGUGAAUA   1   ||=--||=|||||||||||||||*|| targets:12   UUGGCUUGCAACGUUUGACCACUCAU   37 Target Full Sequence	2.5	Sequence 2673 from Patent EP2985353	NA	coding protein	psRNATarget
JB165009.1	ncRNA:24   AAU--AAUGUUGCAAACUGGUGAAUA   1   ||=--||=|||||||||||||||*|| targets:12   UUGGCUUGCAACGUUUGACCACUCAU   37 Target Full Sequence	2.5	Sequence 2673 from Patent EP2559767	NA	coding protein	psRNATarget
HI404548.1	ncRNA:24   AAU--AAUGUUGCAAACUGGUGAAUA   1   ||=--||=|||||||||||||||*|| targets:12   UUGGCUUGCAACGUUUGACCACUCAU   37 Target Full Sequence	2.5	Sequence 2673 from Patent EP2074227	NA	coding protein	psRNATarget