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BaseInfo

ncRNA ID	novel_osa_miR2447
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:35187999-35188168 [-]
Reference genome	IRGSP-1.0
Source	SRR1849774
Length	21
Mature sequence(if miRNA)	1 - UUAAAGUUAGACACAAAAACU - 21
Stem-loop(if miRNA)	--UUUUC     C           G         AUAA         --AU      UAUUUUUAUU     UAGAU          G        GUGUC AAUUUUAAUCG CCGUUUUAU    UUUUUUUUU    GAUUAG          GUUAU     UAUAAAAUAU A        ||||| ||||||||||| |||||||||    |||||||||    ||||||          |||||     |||||||||| A        CACAG UUGAAAUUAGC GGCAGAAUA    AAAAAAGAA    UUGAUU          CAGUA     GUAUUUUAUG U UCAAAAA     A           A         AACA         CUUU      -UUUUAUAUU     ----C          A
Stem-loop sequence	UUUUCGUGUCCAAUUUUAAUCGGCCGUUUUAUAUAAUUUUUUUUUAUGAUUAGUAUUUUUAUUGUUAUUAGAUUAUAAAAUAUGAAUAGUAUUUUAUGCAUGACUUAUAUUUUUUAGUUUUUCAAGAAAAAAACAAAUAAGACGGACGAUUAAAGUUAGACACAAAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289040.1	ncRNA:21   UCAAAAACACAGAUUGAAAUU   1   ||||||*|||||||||||||| targets:2096   AGUUUUCGUGUCUAACUUUAA   2116 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090091O20, full insert sequence	NA	coding protein	psRNATarget
XM_015760701.1	ncRNA:21   UCAAAAACACAGAUUGAAAUU   1   ||||*||||||=||||||||| targets:1082   AGUUCUUGUGUUUAACUUUAA   1102 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group serpin-Z2B (LOC107275734), mRNA	serpin-Z2B(LOC107275734)	coding protein	psRNATarget
XM_015779132.1	ncRNA:21   UCAAAAACACAGAUUGAAAUU   1   |||||**|||||||||||||| targets:2789   AGUUUCCGUGUCUAACUUUAA   2809 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group receptor-like protein 12 (LOC4337209), mRNA	receptor-like protein 12(LOC4337209)	coding protein	psRNATarget
AK288762.1	ncRNA:21   UCAAAAACACAGAUUGAAAUU   1   ||||||**||||||||||||| targets:912   AGUUUUCAUGUCUAACUUUAA   932 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090067F13, full insert sequence	NA	coding protein	psRNATarget
AK071262.1	ncRNA:21   UCAAAAACACAGAUUGAAAUU   1   =|||||*|||||*|||||||| targets:1231   GGUUUUCGUGUCCAACUUUAA   1251 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023085J06, full insert sequence	NA	coding protein	psRNATarget
XM_015787836.1	ncRNA:21   UCAAAAACACAGAUUGAAAUU   1   =|||||*|||||*|||||||| targets:1224   GGUUUUCGUGUCCAACUUUAA   1244 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342071 (LOC4342071), mRNA	uncharacterized LOC4342071(LOC4342071)	coding protein	psRNATarget