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BaseInfo

ncRNA ID	novel_osa_miR2443
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:23116483-23116631 [-]
Reference genome	IRGSP-1.0
Source	SRR1849774
Length	21
Mature sequence(if miRNA)	129 - UAGGUUUGACCAAGUUUAUAG - 149
Stem-loop(if miRNA)	--UA         A        -        U  C     CUA      -CAAA    UUUCAUUAAAUCUAACAU     GGUUUGACC AGUUUAUA GAAAAUAU AG AACAU   CAAUGC     UUAG                  U     ||||||||| |||||||| |||||||| || |||||   ||||||     ||||     UCAAACUGG UCAAAUAU UUUUUAUA UC UUGUA   GUUACG     UUUG                  G AAAC         C        A        -  A     AAA      UUUUG    UAUAAUAGUUUUAUAUAA
Stem-loop sequence	UAGGUUUGACCAAGUUUAUAGAAAAUAUUAGCAACAUCUACAAUGCCAAAUUAGUUUCAUUAAAUCUAACAUUGAAUAUAUUUUGAUAAUAUGUUUGUUUUGCAUUGAAAAUGUUACUAUAUUUUUAUAUAAACUCGGUCAAACUCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835543.1	ncRNA:21   GAUAUUUGAACCAGUUUGGAU   1   ||||||||||||||||||=|| targets:685   CUAUAAACUUGGUCAAACUUA   705 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA220L16, full insert sequence	NA	coding protein	psRNATarget
XM_015765055.1	ncRNA:21   GAUAUUUGAACCAGUUUGGAU   1   ||||||||||||||||||=|| targets:2064   CUAUAAACUUGGUCAAACUUA   2084 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable mixed-linked glucan synthase 7 (LOC9266650), transcript variant X1, mRNA	probable mixed-linked glucan synthase 7(LOC9266650)	coding protein	psRNATarget
AK120387.1	ncRNA:21   GAUAUUUGAACCAGUUUGGAU   1   =|||||||||||||||||=|| targets:487   UUAUAAACUUGGUCAAACUUA   507 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013073J05, full insert sequence	NA	coding protein	psRNATarget
AK065802.1	ncRNA:21   GAUAUUUGAACCAGUUUGGAU   1   |||||||=||||||||||=|| targets:895   CUAUAAAUUUGGUCAAACUUA   915 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013036O21, full insert sequence	NA	coding protein	psRNATarget
XM_015778310.1	ncRNA:21   GAUAUUUGAACCAGUUUGGAU   1   =|||||||||||||||||=|= targets:2270   UUAUAAACUUGGUCAAACUUG   2290 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group gamma-glutamyltranspeptidase 1 (LOC4336033), mRNA	gamma-glutamyltranspeptidase 1(LOC4336033)	coding protein	psRNATarget
AK107593.1	ncRNA:21   GAUAUUUGAACCAGUUUGGAU   1   =|||||||||||*|||||||| targets:1229   UUAUAAACUUGGCCAAACCUA   1249 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-131-A08, full insert sequence	NA	coding protein	psRNATarget
AK063297.1	ncRNA:21   GAUAUUUGAACCAGUUUGGAU   1   =|||||||||||||||||*|| targets:1650   UUAUAAACUUGGUCAAACGUA   1670 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-113-E11, full insert sequence	NA	coding protein	psRNATarget
XM_015762557.1	ncRNA:21   GAUAUUUGAACCAGUUUGGAU   1   =|||||||||||*|||||||| targets:1569   UUAUAAACUUGGCCAAACCUA   1589 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group endothelin-converting enzyme 2 (LOC4350724), transcript variant X2, mRNA	endothelin-converting enzyme 2(LOC4350724)	coding protein	psRNATarget
AK120213.1	ncRNA:21   GAUAUUUGAACCAGUUUGGAU   1   *|||=||||||||||||||*| targets:1208   AUAUGAACUUGGUCAAACCAA   1228 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013039G14, full insert sequence	NA	coding protein	psRNATarget
AK119265.1	ncRNA:21   GAUAUUUGAACCAGUUUGGAU   1   |*|||||||||*||||||||| targets:619   CCAUAAACUUGAUCAAACCUA   639 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-130-A05, full insert sequence	NA	coding protein	psRNATarget
XM_015757710.1	ncRNA:21   GAUAUUUGAACCAGUUUGGAU   1   |*|*||||||||||||||=|| targets:14   CAACAAACUUGGUCAAACUUA   34 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278283 (LOC107278283), mRNA	uncharacterized LOC107278283(LOC107278283)	coding protein	psRNATarget