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BaseInfo

ncRNA ID	novel_osa_miR2442
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:28555229-28555401 [-]
Reference genome	IRGSP-1.0
Source	SRR1849774
Length	22
Mature sequence(if miRNA)	152 - UUUUUACUUGCACUGUUUGAUC - 173
Stem-loop(if miRNA)	--      C   C           A  C   U          ----------   UGUGCAAAUAUAAAACCCGAAAAGUUGUACUUAAAG   UUUUUA UUG ACUGUUUGAUC CU GUC UAUUCAAAAA          UUU                                    U   |||||| ||| ||||||||||| || ||| ||||||||||          |||                                    A   AAAAAU AAC UGACAAACUGG GA CAG AUAAGUUUUU          AUA                                    C UC      A   A           C  U   U          UUAAACUUUA   AUAAAUAUAAAAAACACUGAAUGAAAUAAUAGGUCU
Stem-loop sequence	UUUUUACUUGCACUGUUUGAUCACUCGUCUUAUUCAAAAAUUUUGUGCAAAUAUAAAACCCGAAAAGUUGUACUUAAAGUACUCUGGAUAAUAAAGUAAGUCACAAAAAAUAUAAAUAAUAAUUUCAAAUUUUUUUGAAUAUGACUAGCGGUCAAACAGUACAAAUAAAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837645.1	ncRNA:22   CUAGUUUGUCACGUUCAUUUUU   1   |=|||||||||||||||||||* targets:611   GGUCAAACAGUGCAAGUAAAAU   632 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063B15, full insert sequence	NA	coding protein	psRNATarget
AK288846.1	ncRNA:22   CUAGUUUGUCACGUUCAUUUUU   1   ||||||||||||||||*||||| targets:63   GAUCAAACAGUGCAAGCAAAAA   84 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090075E22, full insert sequence	NA	coding protein	psRNATarget
CT837708.1	ncRNA:22   CUAGUUUGUCACGUUCAUUUUU   1   |=||||||||||||||*||||| targets:674   GGUCAAACAGUGCAAGCAAAAA   695 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA220M04, full insert sequence	NA	coding protein	psRNATarget
AK288595.1	ncRNA:22   CUAGUUUGUCACGUUCAUUUUU   1   |=||||||=|||||||*||||| targets:815   GGUCAAACGGUGCAAGCAAAAA   836 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090051J16, full insert sequence	NA	coding protein	psRNATarget
XM_015790568.1	ncRNA:22   CUAGUUUGUCACGUUCAUUUUU   1   |=||||||=|||||||*||||| targets:876   GGUCAAACGGUGCAAGCAAAAA   897 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277036 (LOC107277036), mRNA	uncharacterized LOC107277036(Os07g0616850)	coding protein	psRNATarget
AK289013.1	ncRNA:22   CUAGUUUGUCACGUUCAUUUUU   1   |=|=||||||||||||*||||| targets:1533   GGUUAAACAGUGCAAGCAAAAA   1554 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK288319.1	ncRNA:22   CUAGUUUGUCACGUUCAUUUUU   1   |=||||||=*|||||||||||| targets:1854   GGUCAAACGUUGCAAGUAAAAA   1875 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence	NA	coding protein	psRNATarget
AK068624.1	ncRNA:22   CUAGUUUGUCACGUUCAUUUUU   1   |=||||||||||||||*||||* targets:191   GGUCAAACAGUGCAAGCAAAAU   212 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013153F11, full insert sequence	NA	coding protein	psRNATarget
AK066510.1	ncRNA:22   CUAGUUUGUCACGUUCAUUUUU   1   |=||||||||||||||*||||* targets:1430   GGUCAAACAGUGCAAGCAAAAU   1451 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013068L16, full insert sequence	NA	coding protein	psRNATarget
AK288203.1	ncRNA:22   CUAGUUUGUCACGUUCAUUUUU   1   |=||||||||||||||*||||* targets:1709   GGUCAAACAGUGCAAGCAAAAU   1730 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence	NA	coding protein	psRNATarget