ncRNA ID | ath-miR5996 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr4:7882765-7882889 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 84 - UGACAUCCAGAUAGAAGCUUUG - 105 |
Stem-loop(if miRNA) |
--  A                                  C            ---C      GU   GU CUAAUUUUUCGAGCACAUGACAUCCAGAUAGAAG UUUGUUAAACGU    AUCAAA  C   || |||||||||||||||||||||||||||||||||| ||||||||||||    ||||||  A   CA GAUUGAGAAGCUCGUGUACUGUAGGUUUAUCUUC AAACAAUUUGCA    UGGUUU  A AU  A                                  -            AAUA      AG |
Stem-loop sequence | GUACUAAUUUUUCGAGCACAUGACAUCCAGAUAGAAGCUUUGUUAAACGUCAUCAAAGUCAAGAUUUGGUAUAAACGUUUAACAAACUUCUAUUUGGAUGUCAUGUGCUCGAAGAGUUAGAACUA |
1 | PMID:22221297
"Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology"; Zhang B, Xie D, Jin Z; J Integr Plant Biol. 54:73-86(2012). |