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BaseInfo

ncRNA ID ath-miR5996
Species Arabidopsis thaliana
Class miRNA
Genome position chr4:7882765-7882889 [-]
Reference genome TAIR10
Source miRBase
Length 22
Mature sequence(if miRNA) 84 - UGACAUCCAGAUAGAAGCUUUG - 105
Stem-loop(if miRNA) --  A                                  C            ---C      GU
  GU CUAAUUUUUCGAGCACAUGACAUCCAGAUAGAAG UUUGUUAAACGU    AUCAAA  C
  || |||||||||||||||||||||||||||||||||| ||||||||||||    ||||||  A
  CA GAUUGAGAAGCUCGUGUACUGUAGGUUUAUCUUC AAACAAUUUGCA    UGGUUU  A
AU  A                                  -            AAUA      AG
Stem-loop sequence GUACUAAUUUUUCGAGCACAUGACAUCCAGAUAGAAGCUUUGUUAAACGUCAUCAAAGUCAAGAUUUGGUAUAAACGUUUAACAAACUUCUAUUUGGAUGUCAUGUGCUCGAAGAGUUAGAACUA

Reference

1 PMID:22221297
"Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology";
Zhang B, Xie D, Jin Z;
J Integr Plant Biol. 54:73-86(2012).