Search result

BaseInfo

ncRNA ID	novel_osa_miR2439
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:8703838-8703978 [+]
Reference genome	IRGSP-1.0
Source	SRR1849774
Length	25
Mature sequence(if miRNA)	117 - AUUUGUUUAUAAACUUAGUCAAACU - 141
Stem-loop(if miRNA)	--                  AAAA       ACAUUUUCAACCUAAGACAAUUUUAUUAUGAAAAUAUAUUC   UUUGACUAAGUUUGUAGA    AGUAUUA                                         A   ||||||||||||||||||    |||||||                                         A   AAACUGAUUCAAAUAUUU    GUUUAUA                                         U UC                  ----       UCAUUAUAAAUAUUAUGAUUUAAUCAAAGUAGUUUAAUUAU
Stem-loop sequence	UUUGACUAAGUUUGUAGAAAAAAGUAUUAACAUUUUCAACCUAAGACAAUUUUAUUAUGAAAAUAUAUUCAAUUAUUAAUUUGAUGAAACUAAUUUAGUAUUAUAAAUAUUACUAUAUUUGUUUAUAAACUUAGUCAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015773578.1	ncRNA:25   UCAAACUGAUUCAAAUAUUUGUUUA   1   ||||||||||||||||||||=|||| targets:315   AGUUUGACUAAGUUUAUAAAUAAAU   339 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative F-box protein At2g02030 (LOC9271925), transcript variant X3, mRNA	putative F-box protein At2g02030(LOC9271925)	coding protein	psRNATarget
AK288358.1	ncRNA:25   UCAAACUGAUUCAAAUAUUUGUUUA   1   |||||*||||||||||||=|||||| targets:920   AGUUUAACUAAGUUUAUAGACAAAU   944 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090024L19, full insert sequence	NA	coding protein	psRNATarget
AK288635.1	ncRNA:25   UCAAACUGAUUCAAAUAUUUGUUUA   1   |*||||||||||||||||=|||||| targets:426   AAUUUGACUAAGUUUAUAGACAAAU   450 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090055J05, full insert sequence	NA	coding protein	psRNATarget
AK288203.1	ncRNA:25   UCAAACUGAUUCAAAUAUUUGUUUA   1   ||||||||||||||||||||*|||* targets:2872   AGUUUGACUAAGUUUAUAAAAAAAA   2896 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence	NA	coding protein	psRNATarget
AK065615.1	ncRNA:25   UCAAACUGAUUCAAAUAUUUGUUUA   1   |*|||*||||||||||||=|||||| targets:2869   AAUUUAACUAAGUUUAUAGACAAAU   2893 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013026B17, full insert sequence	NA	coding protein	psRNATarget
AK241906.1	ncRNA:25   UCAAACUGAUUCAAAUAUUUGUUUA   1   |||||*|||||*||||||=|||||| targets:963   AGUUUAACUAAAUUUAUAGACAAAU   987 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence	NA	coding protein	psRNATarget
AK065071.1	ncRNA:25   UCAAACUGAUUCAAAUAUUUGUUUA   1   |*|||*|=||||||||||=|||||| targets:2398   AAUUUAAUUAAGUUUAUAGACAAAU   2422 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013001K07, full insert sequence	NA	coding protein	psRNATarget
CT827938.1	ncRNA:25   UC-AAACUGAUUCAAAUAUUUGUUUA   1   ||-|||||||||*||||||||*|||| targets:551   AGAUUUGACUAAAUUUAUAAAAAAAU   576 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN056H21, full insert sequence	NA	coding protein	psRNATarget
CT827939.1	ncRNA:25   UC-AAACUGAUUCAAAUAUUUGUUUA   1   ||-|||||||||*||||||||*|||| targets:549   AGAUUUGACUAAAUUUAUAAAAAAAU   574 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN085I01, full insert sequence	NA	coding protein	psRNATarget