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BaseInfo

ncRNA ID	novel_osa_miR2435
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:21620919-21621088 [+]
Reference genome	IRGSP-1.0
Source	SRR1849774;SRR2040383;SRR2040386;SRR2040394;SRR2040396
Length	23
Mature sequence(if miRNA)	1 - UUUUCGCACCCAACUUUGAUCGU - 23
Stem-loop(if miRNA)	--       AC                         -          ----AU        UUUU   -U        A   UAAAAUGU   UUUUCGC  CCAACUUUGAUCGUUCGUCUUAUUU AAAAUUUUUU      AAUUAGAA    CGU  GUUAUGAG UGA        G   |||||||  ||||||||||||||||||||||||| ||||||||||      ||||||||    |||  |||||||| |||   AAAAGCG  GGUUGAAACUGGUAGGCAGAAUAAA UUUUAAAAAA      UUAAUUUU    GUA  CAGUGCUC AUU        A CA       CA                         C          AUUUUU        ---U   UU        -   UCAUGAUA
Stem-loop sequence	UUUUCGCACCCAACUUUGAUCGUUCGUCUUAUUUAAAAUUUUUUAUAAUUAGAAUUUUCGUUGUUAUGAGAUGAUAAAAUGUGAAUAGUACUUUACUCGUGACUUAUGUUUUUAAUUUUUUUAAAAAAAUUUUCAAAUAAGACGGAUGGUCAAAGUUGGACGCGAAAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK070816.1	ncRNA:23   UGCUAGUUUCAACCCACGCUUUU   1   |||=|=|||||||||||||=||| targets:3586   ACGGUUAAAGUUGGGUGCGGAAA   3608 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023066M01, full insert sequence	NA	coding protein	psRNATarget
AK070816.1	ncRNA:23   UGCUAGUUUCAACCCACGCUUUU   1   *||=|=|||||||||||||=||| targets:3610   UCGGUUAAAGUUGGGUGCGGAAA   3632 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023066M01, full insert sequence	NA	coding protein	psRNATarget
EF575786.1	ncRNA:23   UGCUAGUUUCAACCCACGCUUUU   1   ||||*|||||||||||||*|||| targets:240   ACGACCAAAGUUGGGUGCUAAAA   262 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) clone OSE-97-192-C12 unknown mRNA	NA	coding protein	psRNATarget
AK105921.1	ncRNA:23   UGCUAGUUUCAACCCACGCUUUU   1   ||||*|||||||||||||*|||| targets:1204   ACGACCAAAGUUGGGUGCUAAAA   1226 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-205-A04, full insert sequence	NA	coding protein	psRNATarget
AK060682.1	ncRNA:23   UGCUAGUUUCAACCCACGCUUUU   1   ||||*|||||||||||||*|||| targets:1329   ACGACCAAAGUUGGGUGCUAAAA   1351 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-029-E10, full insert sequence	NA	coding protein	psRNATarget
XM_015766935.1	ncRNA:23   UGCUAGUUUCAACCCACGCUUUU   1   ||||*|||||||||||||*|||| targets:1332   ACGACCAAAGUUGGGUGCUAAAA   1354 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325311 (LOC4325311), mRNA	uncharacterized LOC4325311(LOC4325311)	coding protein	psRNATarget
AK072500.1	ncRNA:23   UGCUAGUUUCAACCCACGCUUUU   1   ||||*|||||||||||||*|||| targets:1333   ACGACCAAAGUUGGGUGCUAAAA   1355 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023127H12, full insert sequence	NA	coding protein	psRNATarget