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BaseInfo

ncRNA ID	novel_osa_miR2428
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:14130484-14130668 [+]
Reference genome	IRGSP-1.0
Source	SRR1849773;SRR2098557;SRR3234045;SRR4407777;SRR4407779;SRR4407955;SRR4407958;SRR4407961;SRR4407962;SRR5351740;SRR1654491;SRR1738212
Length	22
Mature sequence(if miRNA)	1 - UCGGCCUCGUGGAUGGACCAGG - 22
Stem-loop(if miRNA)	--   G    G          A     -  A  A           U    U   A     AU            CG     A  GU      A   UCG CCUC UGGAUGGACC GGAGC UC AC UUCCUUAAGGU GUUC UUC AACCC  ACAAGGUUCCAC  CCUGC UU  UCCAAG G   ||| |||| |||||||||| ||||| || || ||||||||||| |||| ||| |||||  ||||||||||||  ||||| ||  |||||| U   AGC GGAG ACCUGCCUGG CCUCG AG UG AAGGAAUUCCG CAAG AAG UUGGG  UGUUCCAAGGUG  GGAUG AA  AGGUUC G UC   A    G          A     U  C  -           U    C   G     AU            AA     A  GU      U
Stem-loop sequence	UCGGCCUCGUGGAUGGACCAGGAGCUCAACAUUCCUUAAGGUUGUUCUUUCAAACCCAUACAAGGUUCCACCGCCUGCAUUGUUCCAAGAGUGUCUUGGAUGAAAGUAGGAAGUGGAACCUUGUUAGGGUUGGAACGAACUGCCUUAAGGAAGUCGAUGCUCCAGGUCCGUCCAGGAGGACGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015782959.1	ncRNA:22   GGACCAGGUAGGUGCUCCGGCU   1   |**|||=|||||||||||||*| targets:1050   CGCGGUUCAUCCACGAGGCCAA   1071 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group L-ascorbate oxidase homolog (LOC4339141), transcript variant X1, mRNA	L-ascorbate oxidase homolog(LOC4339141)	coding protein	psRNATarget
XM_015782960.1	ncRNA:22   GGACCAGGUAGGUGCUCCGGCU   1   |**|||=|||||||||||||*| targets:1050   CGCGGUUCAUCCACGAGGCCAA   1071 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group L-ascorbate oxidase homolog (LOC4339141), transcript variant X2, mRNA	L-ascorbate oxidase homolog(LOC4339141)	coding protein	psRNATarget
XM_015782961.1	ncRNA:22   GGACCAGGUAGGUGCUCCGGCU   1   |**|||=|||||||||||||*| targets:1050   CGCGGUUCAUCCACGAGGCCAA   1071 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group L-ascorbate oxidase homolog (LOC4339141), transcript variant X3, mRNA	L-ascorbate oxidase homolog(LOC4339141)	coding protein	psRNATarget
AK105493.1	ncRNA:22   GGACCAGGUAGGUGCUCCGGCU   1   ***|||*|=||||||||||||| targets:225   GGCGGUACGUCCACGAGGCCGA   246 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-127-C03, full insert sequence	NA	coding protein	psRNATarget
XM_015766171.1	ncRNA:22   GGACCAGGUAGGUGCUCCGGCU   1   ***|||*|=||||||||||||| targets:230   GGCGGUACGUCCACGAGGCCGA   251 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 2 (LOC4325516), mRNA	NAC domain-containing protein 2(LOC4325516)	coding protein	psRNATarget
JN185443.1	ncRNA:22   GGACCAGGUAGGUGCUCCGGCU   1   ***|||*|=||||||||||||| targets:119   GGCGGUACGUCCACGAGGCCGA   140 Target Full Sequence	2.0	Oryza sativa Japonica Group NAC transcription factor 14 (NAC14) mRNA, complete cds	NA	coding protein	psRNATarget
XM_015785281.1	ncRNA:22   GGACCAGGUAGGUGCUCCGGCU   1   ****|||||*|||||||||||| targets:427   AGAAGUCCAACCACGAGGCCGA   448 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group M protein, serotype 5 (LOC4339509), mRNA	M protein, serotype 5(LOC4339509)	coding protein	psRNATarget
AK060333.1	ncRNA:22   GGACCAGGUAGGUGCUCCGGCU   1   ****|||||*|||||||||||| targets:418   AGAAGUCCAACCACGAGGCCGA   439 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-008-B08, full insert sequence	NA	coding protein	psRNATarget
AK100682.1	ncRNA:22   GGACCAGGUAGGUGCUCCGGCU   1   ****|||||*|||||||||||| targets:419   AGAAGUCCAACCACGAGGCCGA   440 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023113L22, full insert sequence	NA	coding protein	psRNATarget