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BaseInfo

ncRNA ID	novel_osa_miR2416
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:4807106-4807266 [-]
Reference genome	IRGSP-1.0
Source	SRR1849773
Length	21
Mature sequence(if miRNA)	1 - UCGAGGUACUUUUGGUUGGAC - 21
Stem-loop(if miRNA)	--     A                              C  ACGAU             C                -UG   AG   CCAAU AAAAGUACCUCGAGGUACCGGUACCUCACG GU     ACUAAAUCGUUUC GAUCGUUGGAUCUAGC   GCC  G   ||||| |||||||||||||||||||||||||||||| ||     ||||||||||||| ||||||||||||||||   |||   GGUUG UUUUCAUGGAGCUCCAUGGCCAUGGAGUGC CA     UGGUUUAGCAAAG CUAGCAACCUAGAUUG   CGG  A CA     G                              -  -----             A                UUA   AU
Stem-loop sequence	CCAAUAAAAAGUACCUCGAGGUACCGGUACCUCACGCGUACGAUACUAAAUCGUUUCCGAUCGUUGGAUCUAGCUGGCCAGGAUAGGCAUUGUUAGAUCCAACGAUCAGAAACGAUUUGGUACCGUGAGGUACCGGUACCUCGAGGUACUUUUGGUUGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235663.1	ncRNA:21   CAGGUUGGUUUUCAUGGAGCU   1   |||||||*||||||||||||| targets:10   GUCCAACAAAAAGUACCUCGA   30 Target Full Sequence	1.0	Sequence 1658 from Patent EP2985353	NA	coding protein	psRNATarget
HI403533.1	ncRNA:21   CAGGUUGGUUUUCAUGGAGCU   1   |||||||*||||||||||||| targets:10   GUCCAACAAAAAGUACCUCGA   30 Target Full Sequence	1.0	Sequence 1658 from Patent EP2074227	NA	coding protein	psRNATarget
JB163994.1	ncRNA:21   CAGGUUGGUUUUCAUGGAGCU   1   |||||||*||||||||||||| targets:10   GUCCAACAAAAAGUACCUCGA   30 Target Full Sequence	1.0	Sequence 1658 from Patent EP2559767	NA	coding protein	psRNATarget
AK103106.1	ncRNA:21   CAGGUUGGUUUUCAUGGAGCU   1   ||||||=*||||||||||||| targets:1437   GUCCAAUAAAAAGUACCUCGA   1457 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033118O22, full insert sequence	NA	coding protein	psRNATarget
XM_015765802.1	ncRNA:21   CAGGUUGGUUUUCAUGGAGCU   1   ||||||=*||||||||||||| targets:1436   GUCCAAUAAAAAGUACCUCGA   1456 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group polygalacturonase (LOC4326679), mRNA	polygalacturonase(LOC4326679)	coding protein	psRNATarget
XM_015786123.1	ncRNA:21   CAGGUUGGUUUUCAUGGAGCU   1   |||||||*|||||||*||||| targets:620   GUCCAACAAAAAGUAACUCGA   640 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA	uncharacterized LOC4340617(LOC4340617)	coding protein	psRNATarget
AK107667.1	ncRNA:21   CAGGUUGGUUUUCAUGGAGCU   1   |||||||*||||*|||||||| targets:1055   GUCCAACAAAAAAUACCUCGA   1075 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-131-H04, full insert sequence	NA	coding protein	psRNATarget
XM_015755204.1	ncRNA:21   CAGGUUGGUUUUCAUGGAGCU   1   |||||||*||||*|||||||| targets:1102   GUCCAACAAAAAAUACCUCGA   1122 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347453 (LOC4347453), mRNA	uncharacterized LOC4347453(LOC4347453)	coding protein	psRNATarget
AK287529.1	ncRNA:21   CAGGUUGGUUUUCAUGGAGCU   1   |||||||*|||||||*||||| targets:131   GUCCAACAAAAAGUAACUCGA   151 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK240791.1	ncRNA:21   CAGGUUGGUUUUCAUGGAGCU   1   |||||||*|||||||*||||| targets:131   GUCCAACAAAAAGUAACUCGA   151 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget