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BaseInfo

ncRNA ID novel_osa_miR2412
Species Oryza sativa
Class miRNA
Genome position Chr11:2086774-2086997 [+]
Reference genome IRGSP-1.0
Source SRR1849773
Length 25
Mature sequence(if miRNA) 1 - AAACUACAGAUUUAAGAACUUGUUA - 25
Stem-loop(if miRNA) --        G               A A        C       AUAUC   A         A       G           C    -              G       C
  AAACUACA AUUUAAGAACUUGUU C CAAAACUA AGAUUUA     UUC UUUAUCACA AACUACA GUUUAGUGUCU CAUU AUCACAAAACUAUA GUUUUAG A
  |||||||| ||||||||||||||| | |||||||| |||||||     ||| ||||||||| ||||||| ||||||||||| |||| |||||||||||||| ||||||| U
  UUUGAUGU UAAAUUCUUGAACAA G GUUUUGAU UCUAAAU     AAG AAAUAGUGU UUGAUGU UAAAUCACAGA GUAA UAGUGUUUUGAUGU CAAAAUU U
GU        A               A A        A       CACAU   C         C       A           A    A              A       A
Stem-loop sequence AAACUACAGAUUUAAGAACUUGUUACACAAAACUACAGAUUUAAUAUCUUCAUUUAUCACAAAACUACAGGUUUAGUGUCUCCAUUAUCACAAAACUAUAGGUUUUAGCAUUAUUAAAACAUGUAGUUUUGUGAUAAAUGAAGACACUAAAUAUGUAGUUCUGUGAUAAACGAAUACACUAAAUCUAUAGUUUUGAGAAACAAGUUCUUAAAUAUGUAGUUUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288562.1
ncRNA:25   AUUGUUCAAGAAUUUAGACAUCAAA   1
  **||||*|*||||||||||||||||
targets:4076   AUACAACUCCUUAAAUCUGUAGUUU   4100

2.0 Oryza sativa Japonica Group cDNA, clone: J090047L17, full insert sequence NA coding protein psRNATarget