ncRNA ID | novel_osa_miR2412 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr11:2086774-2086997 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1849773 |
Length | 25 |
Mature sequence(if miRNA) | 1 - AAACUACAGAUUUAAGAACUUGUUA - 25 |
Stem-loop(if miRNA) |
--        G               A A        C       AUAUC   A         A       G           C    -              G       C   AAACUACA AUUUAAGAACUUGUU C CAAAACUA AGAUUUA     UUC UUUAUCACA AACUACA GUUUAGUGUCU CAUU AUCACAAAACUAUA GUUUUAG A   |||||||| ||||||||||||||| | |||||||| |||||||     ||| ||||||||| ||||||| ||||||||||| |||| |||||||||||||| ||||||| U   UUUGAUGU UAAAUUCUUGAACAA G GUUUUGAU UCUAAAU     AAG AAAUAGUGU UUGAUGU UAAAUCACAGA GUAA UAGUGUUUUGAUGU CAAAAUU U GU        A               A A        A       CACAU   C         C       A           A    A              A       A |
Stem-loop sequence | AAACUACAGAUUUAAGAACUUGUUACACAAAACUACAGAUUUAAUAUCUUCAUUUAUCACAAAACUACAGGUUUAGUGUCUCCAUUAUCACAAAACUAUAGGUUUUAGCAUUAUUAAAACAUGUAGUUUUGUGAUAAAUGAAGACACUAAAUAUGUAGUUCUGUGAUAAACGAAUACACUAAAUCUAUAGUUUUGAGAAACAAGUUCUUAAAUAUGUAGUUUUG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK288562.1 |
|
2.0 | Oryza sativa Japonica Group cDNA, clone: J090047L17, full insert sequence | NA | coding protein | psRNATarget |