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BaseInfo

ncRNA ID	novel_osa_miR2410
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:21639888-21640034 [+]
Reference genome	IRGSP-1.0
Source	SRR1849773
Length	21
Mature sequence(if miRNA)	127 - UUGGACUUGAGAUUUGGUGAG - 147
Stem-loop(if miRNA)	--U       A                        U   UAAC      ----         UG           AU    GCCAAAU UCAAGUUUAAACUCAACUUUAUUU GGG    AAAUAA    GACAAAUUU  GGUGAAUAGUA  A    ||||||| |||||||||||||||||||||||| |||    ||||||    |||||||||  |||||||||||    UGGUUUA AGUUCAGGUUUGAGUUGAAAUAAA CUC    UUUAUU    CUGUUUAAA  CCACUUAUCAU  U GAG       G                        -   --UC      UUUA         GU           CG
Stem-loop sequence	UGCCAAAUAUCAAGUUUAAACUCAACUUUAUUUUGGGUAACAAAUAAGACAAAUUUUGGGUGAAUAGUAAUAUGCUACUAUUCACCUGAAAUUUGUCAUUUUUAUUUCUCUCAAAUAAAGUUGAGUUUGGACUUGAGAUUUGGUGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB164234.1	ncRNA:21   GAGUGGUUUAGAGUUCAGGUU   1   |||||||||||||||||=||| targets:78   CUCACCAAAUCUCAAGUUCAA   98 Target Full Sequence	1.5	Sequence 1898 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235903.1	ncRNA:21   GAGUGGUUUAGAGUUCAGGUU   1   |||||||||||||||||=||| targets:78   CUCACCAAAUCUCAAGUUCAA   98 Target Full Sequence	1.5	Sequence 1898 from Patent EP2985353	NA	coding protein	psRNATarget
HI403773.1	ncRNA:21   GAGUGGUUUAGAGUUCAGGUU   1   |||||||||||||||||=||| targets:78   CUCACCAAAUCUCAAGUUCAA   98 Target Full Sequence	1.5	Sequence 1898 from Patent EP2074227	NA	coding protein	psRNATarget
JB164259.1	ncRNA:21   GAGU--GGUUUAGAGUUCAGGUU   1   =|||--||||||||||||||||| targets:26   UUCAUACCAAAUCUCAAGUCCAA   48 Target Full Sequence	2.5	Sequence 1923 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235928.1	ncRNA:21   GAGU--GGUUUAGAGUUCAGGUU   1   =|||--||||||||||||||||| targets:26   UUCAUACCAAAUCUCAAGUCCAA   48 Target Full Sequence	2.5	Sequence 1923 from Patent EP2985353	NA	coding protein	psRNATarget
HI403798.1	ncRNA:21   GAGU--GGUUUAGAGUUCAGGUU   1   =|||--||||||||||||||||| targets:26   UUCAUACCAAAUCUCAAGUCCAA   48 Target Full Sequence	2.5	Sequence 1923 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015769504.1	ncRNA:21   GAGUGGUUUAGAGUUCAGGUU   1   =||||*||||||=|||||||| targets:1578   UUCACAAAAUCUUAAGUCCAA   1598 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable carboxylesterase 12 (LOC107280084), mRNA	probable carboxylesterase 12(LOC107280084)	coding protein	psRNATarget
XM_015783118.1	ncRNA:21   GAGUGGUUUAGAGUUCAGGUU   1   =*||||||||*|||||||||| targets:1545   UCCACCAAAUAUCAAGUCCAA   1565 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein FAR1-RELATED SEQUENCE 5-like (LOC107280963), mRNA	protein FAR1-RELATED SEQUENCE 5-like(LOC107280963)	coding protein	psRNATarget
CT832946.1	ncRNA:21   GAGUGGUUUAGAGUUCAGGUU   1   |*=|||||||*|||||||||| targets:810   CAUACCAAAUGUCAAGUCCAA   830 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240N02, full insert sequence	NA	coding protein	psRNATarget
AK065400.1	ncRNA:21   GAGUGGUUUAGAGUUCAGGUU   1   |*=|||||||*|||||||||| targets:866   CAUACCAAAUGUCAAGUCCAA   886 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013020I02, full insert sequence	NA	coding protein	psRNATarget