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BaseInfo

ncRNA ID	novel_osa_miR2406
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:7597170-7597266 [+]
Reference genome	IRGSP-1.0
Source	SRR1849773
Length	24
Mature sequence(if miRNA)	1 - AAAAUCUAUUUUCGCAGGCGGACC - 24
Stem-loop(if miRNA)	--AAAA                             A           A       UCUAUUUUCGCAGGCGGACCUCUUAAGCG CGCUUGUGAAA U       ||||||||||||||||||||||||||||| ||||||||||| C       AGAUAAAAGCGUCCGCCUGGAGAAUUCGC GCGGACGCUUU A CAGUUC                             C           U
Stem-loop sequence	AAAAUCUAUUUUCGCAGGCGGACCUCUUAAGCGACGCUUGUGAAAAUCAUUUUCGCAGGCGCCGCUUAAGAGGUCCGCCUGCGAAAAUAGACUUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK105503.1	ncRNA:24   CCAGGCGGACGCUUUUAUCUAAAA   1   ***||*||*||||||||||||||| targets:123   UCACCACCAGCGAAAAUAGAUUUU   146 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-127-D08, full insert sequence	NA	coding protein	psRNATarget
AK119976.1	ncRNA:24   CCA-------GGCGGACGCUUUUAUCUAAAA   1   |||-------||||||||||||||*|||||| targets:571   GGUUAUCCACCCGCCUGCGAAAAUCGAUUUU   601 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-184-F01, full insert sequence	NA	coding protein	psRNATarget
AK288421.1	ncRNA:24   CCAGGCGGACGCUUUUAUCUAAAA   1   ||-|||=|||||||||||*||||| targets:998   GG-CCGUCUGCGAAAAUAUAUUUU   1020 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090032D24, full insert sequence	NA	coding protein	psRNATarget
LQ235754.1	ncRNA:24   CCAGGCGGACGCUUUUAUCUAAAA   1   *|*|||||*||||||||=|||||| targets:78   CGACCGCCAGCGAAAAUGGAUUUU   101 Target Full Sequence	2.5	Sequence 1749 from Patent EP2985353	NA	coding protein	psRNATarget
JB164085.1	ncRNA:24   CCAGGCGGACGCUUUUAUCUAAAA   1   *|*|||||*||||||||=|||||| targets:78   CGACCGCCAGCGAAAAUGGAUUUU   101 Target Full Sequence	2.5	Sequence 1749 from Patent EP2559767	NA	coding protein	psRNATarget
HI403624.1	ncRNA:24   CCAGGCGGACGCUUUUAUCUAAAA   1   *|*|||||*||||||||=|||||| targets:78   CGACCGCCAGCGAAAAUGGAUUUU   101 Target Full Sequence	2.5	Sequence 1749 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236421.1	ncRNA:24   CCAGGCGGACGCUUUUAUCUAAAA   1   ***|||||*||||||||=|||||| targets:34   CAACCGCCAGCGAAAAUGGAUUUU   57 Target Full Sequence	2.5	Sequence 2416 from Patent EP2985353	NA	coding protein	psRNATarget
HI404291.1	ncRNA:24   CCAGGCGGACGCUUUUAUCUAAAA   1   ***|||||*||||||||=|||||| targets:34   CAACCGCCAGCGAAAAUGGAUUUU   57 Target Full Sequence	2.5	Sequence 2416 from Patent EP2074227	NA	coding protein	psRNATarget
JB164752.1	ncRNA:24   CCAGGCGGACGCUUUUAUCUAAAA   1   ***|||||*||||||||=|||||| targets:34   CAACCGCCAGCGAAAAUGGAUUUU   57 Target Full Sequence	2.5	Sequence 2416 from Patent EP2559767	NA	coding protein	psRNATarget
AK288261.1	ncRNA:24   CCAGGCGGACGCUUUUAUCUAAAA   1   ||-||||*|||||||||||||*|| targets:3144   GG-CCGCAUGCGAAAAUAGAUCUU   3166 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090015P07, full insert sequence	NA	coding protein	psRNATarget
JB164887.1	ncRNA:24   CCAGGCGGACGCUUUUAUCUAAAA   1   *|*|||||*|||||||||*||||| targets:122   CGACCGCCAGCGAAAAUAAAUUUU   145 Target Full Sequence	2.5	Sequence 2551 from Patent EP2559767	NA	coding protein	psRNATarget
HI404426.1	ncRNA:24   CCAGGCGGACGCUUUUAUCUAAAA   1   *|*|||||*|||||||||*||||| targets:122   CGACCGCCAGCGAAAAUAAAUUUU   145 Target Full Sequence	2.5	Sequence 2551 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236556.1	ncRNA:24   CCAGGCGGACGCUUUUAUCUAAAA   1   *|*|||||*|||||||||*||||| targets:122   CGACCGCCAGCGAAAAUAAAUUUU   145 Target Full Sequence	2.5	Sequence 2551 from Patent EP2985353	NA	coding protein	psRNATarget
JB164614.1	ncRNA:24   CCAGGCGGACGCUUUUAUCUAAAA   1   ***==|||*||||||||=|||||| targets:34   CAAUUGCCAGCGAAAAUGGAUUUU   57 Target Full Sequence	2.5	Sequence 2278 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236283.1	ncRNA:24   CCAGGCGGACGCUUUUAUCUAAAA   1   ***==|||*||||||||=|||||| targets:34   CAAUUGCCAGCGAAAAUGGAUUUU   57 Target Full Sequence	2.5	Sequence 2278 from Patent EP2985353	NA	coding protein	psRNATarget
HI404153.1	ncRNA:24   CCAGGCGGACGCUUUUAUCUAAAA   1   ***==|||*||||||||=|||||| targets:34   CAAUUGCCAGCGAAAAUGGAUUUU   57 Target Full Sequence	2.5	Sequence 2278 from Patent EP2074227	NA	coding protein	psRNATarget