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BaseInfo

ncRNA ID	novel_osa_miR2403
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:24733169-24733368 [-]
Reference genome	IRGSP-1.0
Source	SRR1849773;SRR2040402;SRR2040405
Length	24
Mature sequence(if miRNA)	177 - AACGUAGAUUACUGACAAAACUCA - 200
Stem-loop(if miRNA)	--      G        C      C                                       C  G                  U  UAC   -A    U   AACGUA AUUACUGA AAAACU AUUCCAUAAUCCCUAGGUUAUUUUGCGAGAUGAAUCUAA GA GUAUAUUAAUCCAUGAUU GC   AGU  AUGC A   |||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||   |||  ||||   UUGCAU UAAUGGCU UUUUGG UAAGGUAUUGGGGAUCUAAUAAAACGCUCUGCUUAGAUU CU CAUAUAAUUAGGUAUUAA CG   UCG  UAUG U AU      A        A      C                                       A  A                  U  ---   AC    A
Stem-loop sequence	AACGUAGAUUACUGACAAAACUCAUUCCAUAAUCCCUAGGUUAUUUUGCGAGAUGAAUCUAACGAGGUAUAUUAAUCCAUGAUUUGCUACAGUAAUGCUAUAGUAUCAGCUGCUAAUUAUGGAUUAAUAUACAUCAUUAGAUUCGUCUCGCAAAAUAAUCUAGGGGUUAUGGAAUCGGUUUUAUCGGUAAUAUACGUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015762321.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |||*||||*||||||||||||||| targets:1109   UGAAUUUUAUCAGUAAUCUACGUU   1132 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group transcription initiation factor TFIID subunit 13 (LOC9268703), mRNA	transcription initiation factor TFIID subunit 13(LOC9268703)	coding protein	psRNATarget
AK240978.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |*||||||||*|||||||||=||| targets:540   UUAGUUUUGUAAGUAAUCUAUGUU   563 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065048J02, full insert sequence	NA	coding protein	psRNATarget
XM_015781418.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |*=|||||*|||||||||||=||| targets:1305   UAGGUUUUAUCAGUAAUCUAUGUU   1328 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group serine/arginine repetitive matrix protein 1 (LOC4335446), mRNA	serine/arginine repetitive matrix protein 1(LOC4335446)	coding protein	psRNATarget
AK107263.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |*=|||||*|||||||||||=||| targets:1216   UAGGUUUUAUCAGUAAUCUAUGUU   1239 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-125-H03, full insert sequence	NA	coding protein	psRNATarget
XM_015766387.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |**|||||||=|*||||||||||| targets:21   UUUGUUUUGUUAUUAAUCUACGUU   44 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325753 (LOC4325753), mRNA	uncharacterized LOC4325753(LOC4325753)	coding protein	psRNATarget