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BaseInfo

ncRNA ID novel_osa_miR2400
Species Oryza sativa
Class miRNA
Genome position Chr4:5100870-5100919 [-]
Reference genome IRGSP-1.0
Source SRR1849773
Length 23
Mature sequence(if miRNA) 28 - UUAAGAGGACCGCACGGAAAAAU - 50
Stem-loop(if miRNA) --        A       -     A
  UUAAGAGG CCGCACG GAAAA U
  |||||||| ||||||| ||||| C
  AAUUCUCC GGCGUGC CUUUU G
UG        A       A     A
Stem-loop sequence UUAAGAGGACCGCACGGAAAAAUCGAUUUUCACGUGCGGACCUCUUAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ236172.1
ncRNA:23   UAAAAAGGCACGCCAGGAGAAUU   1
  |||*|*|||||||||||*|||||
targets:8   AUUAUCCCGUGCGGUCCACUUAA   30

2.5 Sequence 2167 from Patent EP2985353 NA coding protein psRNATarget
HI404042.1
ncRNA:23   UAAAAAGGCACGCCAGGAGAAUU   1
  |||*|*|||||||||||*|||||
targets:8   AUUAUCCCGUGCGGUCCACUUAA   30

2.5 Sequence 2167 from Patent EP2074227 NA coding protein psRNATarget
JB164503.1
ncRNA:23   UAAAAAGGCACGCCAGGAGAAUU   1
  |||*|*|||||||||||*|||||
targets:8   AUUAUCCCGUGCGGUCCACUUAA   30

2.5 Sequence 2167 from Patent EP2559767 NA coding protein psRNATarget