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BaseInfo

ncRNA ID novel_osa_miR2394
Species Oryza sativa
Class miRNA
Genome position Chr3:7331611-7331689 [-]
Reference genome IRGSP-1.0
Source SRR1849773;SRR2040398;SRR2099567;SRR3234040;SRR3234042;SRR4407960;SRR5049784;SRR5049789;SRR1654490;SRR1738241
Length 21
Mature sequence(if miRNA) 1 - UGCUGAGCACAAACUAGAGAA - 21
Stem-loop(if miRNA) --                      A     -ACUA  ACG
  CUCUAGUUUGUGUUCAGCAUCU UGUCA     UG   C
  |||||||||||||||||||||| |||||     ||
  GAGAUCAAACACGAGUCGUAGA ACAGU     AC   U
AA                      C     CAAAC  AAG
Stem-loop sequence CUCUAGUUUGUGUUCAGCAUCUAUGUCAACUAUGACGCUGAACACAAACUGACACAGAUGCUGAGCACAAACUAGAGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB164210.1
ncRNA:21   AAGAGAUCAAACACGAGUCGU   1
  ||||||||||||||=||||||
targets:11   UUCUCUAGUUUGUGUUCAGCA   31

1.5 Sequence 1874 from Patent EP2559767 NA coding protein psRNATarget
HI403749.1
ncRNA:21   AAGAGAUCAAACACGAGUCGU   1
  ||||||||||||||=||||||
targets:11   UUCUCUAGUUUGUGUUCAGCA   31

1.5 Sequence 1874 from Patent EP2074227 NA coding protein psRNATarget
LQ235879.1
ncRNA:21   AAGAGAUCAAACACGAGUCGU   1
  ||||||||||||||=||||||
targets:11   UUCUCUAGUUUGUGUUCAGCA   31

1.5 Sequence 1874 from Patent EP2985353 NA coding protein psRNATarget