ncRNA ID | novel_osa_miR2369 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr10:8419074-8419184 [-] |
Reference genome | IRGSP-1.0 |
Source | SRR1555746;SRR1555747;SRR2097778;SRR2098557;SRR2098560;SRR2098822;SRR2098823;SRR1555751;SRR2099745;SRR2099746;SRR1556011;SRR1556014;SRR4407953;SRR4407959;SRR1556018;SRR1556020 |
Length | 24 |
Mature sequence(if miRNA) | 88 - CAAUAUGUAGCAACCUAGGAUGGG - 111 |
Stem-loop(if miRNA) |
--          C        AUGGGAC                A   A     UCCC   CAAUAUGUAG AACCUAGG       UAGACCCAUCCUAGGA UAC AAUGU    U   |||||||||| ||||||||       |||||||||||||||| ||| |||||    A   GUUAUACAUC UUGGAUCU       AUUUGGGUAGGAUCCU AUG UUAUA    U GG          C        ------A                G   C     CCUG |
Stem-loop sequence | CAAUAUGUAGCAACCUAGGAUGGGACUAGACCCAUCCUAGGAAUACAAAUGUUCCCUAUGUCCAUAUUCGUAGUCCUAGGAUGGGUUUAAUCUAGGUUCCUACAUAUUGGG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_015780419.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At5g04810, chloroplastic (LOC4337454), transcript variant X2, mRNA | pentatricopeptide repeat-containing protein At5g04810, chloroplastic(LOC4337454) | coding protein | psRNATarget |