Search result

BaseInfo

ncRNA ID	novel_osa_miR2348
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:12839388-12839505 [+]
Reference genome	IRGSP-1.0
Source	SRR1849772;SRR2040386;SRR2040388;SRR2040394;SRR2040396;SRR2040402
Length	24
Mature sequence(if miRNA)	1 - GAAUAUAGCAAUCUAGGAUCGGAU - 24
Stem-loop(if miRNA)	--                G           C C  CA     A  C            G   GAAUAUAGCAAUCUAG AUCGGAUGGGA G AU  UAGUA UA GAAUCUGGACAG G   |||||||||||||||| ||||||||||| | ||  ||||| || ||||||||||||   CUUAUAUUGUUGGAUC UGGCCUACCCU C UA  AUCAU AU CUUAGACCUGUC G GU                G           A A  AG     G  A            G
Stem-loop sequence	GAAUAUAGCAAUCUAGGAUCGGAUGGGACGCAUCAUAGUAAUACGAAUCUGGACAGGGGGCUGUCCAGAUUCAUAGUACUAGAAUACAUCCCAUCCGGUGCUAGGUUGUUAUAUUCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB164358.1	ncRNA:24   UAGGCUAGGAUCUAACGAUAUAAG   1   |||=*=|||||||||||||||||| targets:72   AUCUAGUCCUAGAUUGCUAUAUUC   95 Target Full Sequence	1.0	Sequence 2022 from Patent EP2559767	NA	coding protein	psRNATarget
HI403897.1	ncRNA:24   UAGGCUAGGAUCUAACGAUAUAAG   1   |||=*=|||||||||||||||||| targets:72   AUCUAGUCCUAGAUUGCUAUAUUC   95 Target Full Sequence	1.0	Sequence 2022 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236027.1	ncRNA:24   UAGGCUAGGAUCUAACGAUAUAAG   1   |||=*=|||||||||||||||||| targets:72   AUCUAGUCCUAGAUUGCUAUAUUC   95 Target Full Sequence	1.0	Sequence 2022 from Patent EP2985353	NA	coding protein	psRNATarget
AK063060.1	ncRNA:24   UAGGCUAGGAUCUAACGAUAUAAG   1   |*||-|||||||=||||||||||| targets:563   AGCC-AUCCUAGGUUGCUAUAUUC   585 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-110-F08, full insert sequence	NA	coding protein	psRNATarget
CT833367.1	ncRNA:24   UAGGCUAGGAUCUAACGAUAUAAG   1   |*||-|||||||=||||||||||| targets:558   AGCC-AUCCUAGGUUGCUAUAUUC   580 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA051O01, full insert sequence	NA	coding protein	psRNATarget
BT130077.1	ncRNA:24   UAGGCUAGGAUCUAACGAUAUAAG   1   |||=*||||||*|||||||||||= targets:170   AUCUAAUCCUACAUUGCUAUAUUU   193 Target Full Sequence	2.5	Oryza sativa clone RRlibC00253 mRNA sequence	NA	coding protein	psRNATarget
JB164411.1	ncRNA:24   UAGGCUAGGAUCUAACGAUAUAAG   1   |||=*=|||||*|||||||||||| targets:72   AUCUAGUCCUAUAUUGCUAUAUUC   95 Target Full Sequence	2.5	Sequence 2075 from Patent EP2559767	NA	coding protein	psRNATarget
HI403950.1	ncRNA:24   UAGGCUAGGAUCUAACGAUAUAAG   1   |||=*=|||||*|||||||||||| targets:72   AUCUAGUCCUAUAUUGCUAUAUUC   95 Target Full Sequence	2.5	Sequence 2075 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236080.1	ncRNA:24   UAGGCUAGGAUCUAACGAUAUAAG   1   |||=*=|||||*|||||||||||| targets:72   AUCUAGUCCUAUAUUGCUAUAUUC   95 Target Full Sequence	2.5	Sequence 2075 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015761773.1	ncRNA:24   UAGGCUAGGAUCUAACGAUAUAAG   1   =||**||||||||||||||*|||| targets:202   GUCACAUCCUAGAUUGCUACAUUC   225 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278736 (LOC107278736), mRNA	uncharacterized LOC107278736(LOC107278736)	coding protein	psRNATarget