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BaseInfo

ncRNA ID novel_osa_miR2345
Species Oryza sativa
Class miRNA
Genome position Chr3:27613284-27613358 [-]
Reference genome IRGSP-1.0
Source SRR1849772
Length 24
Mature sequence(if miRNA) 52 - GUAGGAUCGUAAAGGACUUUUCCU - 75
Stem-loop(if miRNA) --               A       U           C
  GUAGGAUCGUAAAGG CUUUUCC CACCUCAAAGG U
  ||||||||||||||| ||||||| |||||||||||
  UAUCCUAGCAUUUCC GGAAAGG GUGGGGUUUUC A
AA               C       -           G
Stem-loop sequence GUAGGAUCGUAAAGGACUUUUCCUCACCUCAAAGGCUAGCUUUUGGGGUGGGAAAGGCCCUUUACGAUCCUAUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288950.1
ncRNA:24   UCCUUUUCAGGAAAUGCUAGGAUG   1
  =*|||*||||||||||*|||||||
targets:2448   GAGAAUAGUCCUUUACAAUCCUAC   2471

2.5 Oryza sativa Japonica Group cDNA, clone: J090083J18, full insert sequence NA coding protein psRNATarget