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BaseInfo

ncRNA ID	novel_osa_miR2344
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:35273606-35273787 [+]
Reference genome	IRGSP-1.0
Source	SRR1849772;SRR2040382;SRR2040383;SRR2040384;SRR2040392;SRR2040397;SRR2040403;SRR1460507
Length	24
Mature sequence(if miRNA)	159 - AAACGUUGUAAGUAAAAACUCAAA - 182
Stem-loop(if miRNA)	--          A                C       A     -UUUUU    C    AUAAAAAACGAAAAG     -  UAAAA    G  G   UGAGUUUUUG UUGCAACGUUUGACCA UCGUCUU UUCAA      UUUU AAAU               UUGUG CU     UACU UA A   |||||||||| |||||||||||||||| ||||||| |||||      |||| ||||               ||||| ||     |||| || U   ACUCAAAAAU AAUGUUGCAAACUGGU AGCAGAA AAGUU      AAAA UUUA               AACAC GA     AUGA AU A AA          G                A       C     UUUUUU    C    AUAAUAAAUAAAAUA     U  -----    A  A
Stem-loop sequence	UGAGUUUUUGAUUGCAACGUUUGACCACUCGUCUUAUUCAAUUUUUUUUUCAAAUAUAAAAAACGAAAAGUUGUGCUUAAAAUACUGUAGAUAAUAAAGUAAGUCACAAAUAAAAUAAAUAAUAAUUUCAAAAUUUUUUUUGAACAAGACGAAUGGUCAAACGUUGUAAGUAAAAACUCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289013.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||||||||||||=|||||||| targets:3847   UUUGAGUUUUUACUUGCAACGUUU   3870 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||||||||||||=|||||||| targets:3902   UUUGAGUUUUUACUUGCAACGUUU   3925 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
XM_015763075.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||||||||=|||||||||||| targets:2835   UUUGAGUUUUUGCUUACAACGUUU   2858 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA	protein trichome birefringence-like 28(LOC4327430)	coding protein	psRNATarget
AK288652.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||*||||||||||||||*||| targets:1195   UUUGAAUUUUUACUUACAACAUUU   1218 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090056N01, full insert sequence	NA	coding protein	psRNATarget