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BaseInfo

ncRNA ID	novel_osa_miR2342
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:9229538-9229713 [-]
Reference genome	IRGSP-1.0
Source	SRR1849772;SRR2890846
Length	24
Mature sequence(if miRNA)	1 - ACAAAGUUGUAGAUCGCAUCGAGG - 24
Stem-loop(if miRNA)	--    CA   C                  ------------------------AA      UGAAUUAAAACUGUUUAGGGUCCCAAAAUAUUAUUGCA   UCGA  CGA CUACAACUUUGUAGUUGA                          AGUUUU                                      U   ||||  ||| ||||||||||||||||||                          ||||||   AGCU  GCU GAUGUUGAAACAUCAACU                          CAGGGU                                      G GG    AC   A                  AAAAAAAAAUAAAAUUCAGUAAAAAA      UUUACAUUAAAAUUUUAAUUUUAAAGUUUUAGAUAUUU
Stem-loop sequence	UCGACACGACCUACAACUUUGUAGUUGAAAAGUUUUUGAAUUAAAACUGUUUAGGGUCCCAAAAUAUUAUUGCAUGUUUAUAGAUUUUGAAAUUUUAAUUUUAAAAUUACAUUUUGGGACAAAAAAUGACUUAAAAUAAAAAAAAAUCAACUACAAAGUUGUAGAUCGCAUCGAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288437.1	ncRNA:24   GGAGCUACGCUAGAUGUUGAAACA   1   ||||||*||||||||||||||||| targets:1246   CCUCGACGCGAUCUACAACUUUGU   1269 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090034B12, full insert sequence	NA	coding protein	psRNATarget
XM_015764209.1	ncRNA:24   GGAGCUACGCUAGAUGUUGAAACA   1   =||=||||||*|=||||||||||| targets:215   UCUUGAUGCGUUUUACAACUUUGU   238 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X7, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764209.1	ncRNA:24   GGAGCUACGCUAGAUGUUGAAACA   1   **||*|||*|*||||||||||||| targets:371   AGUCAAUGAGUUCUACAACUUUGU   394 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X7, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764210.1	ncRNA:24   GGAGCUACGCUAGAUGUUGAAACA   1   =||=||||||*|=||||||||||| targets:215   UCUUGAUGCGUUUUACAACUUUGU   238 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X12, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764210.1	ncRNA:24   GGAGCUACGCUAGAUGUUGAAACA   1   **||*|||*|*||||||||||||| targets:371   AGUCAAUGAGUUCUACAACUUUGU   394 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X12, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764208.1	ncRNA:24   GGAGCUACGCUAGAUGUUGAAACA   1   =||=||||||*|=||||||||||| targets:215   UCUUGAUGCGUUUUACAACUUUGU   238 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X2, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764208.1	ncRNA:24   GGAGCUACGCUAGAUGUUGAAACA   1   **||*|||*|*||||||||||||| targets:371   AGUCAAUGAGUUCUACAACUUUGU   394 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X2, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764207.1	ncRNA:24   GGAGCUACGCUAGAUGUUGAAACA   1   =||=||||||*|=||||||||||| targets:215   UCUUGAUGCGUUUUACAACUUUGU   238 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X1, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764207.1	ncRNA:24   GGAGCUACGCUAGAUGUUGAAACA   1   **||*|||*|*||||||||||||| targets:371   AGUCAAUGAGUUCUACAACUUUGU   394 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X1, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
AK288778.1	ncRNA:24   GGAGCUACGCUAGAUGUUGAAACA   1   =||=||||*||||||=|||||||| targets:2943   UCUUGAUGAGAUCUAUAACUUUGU   2966 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090068L12, full insert sequence	NA	coding protein	psRNATarget
AK288778.1	ncRNA:24   GGAGCUACGCUAGAUGUUGAAACA   1   *|||*|*|*||||||||||||||| targets:2783   GCUCAAGGAGAUCUACAACUUUGU   2806 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090068L12, full insert sequence	NA	coding protein	psRNATarget
AK068923.1	ncRNA:24   GGAGCUACGCUAGAUGUUGAAACA   1   ||||||||*|*||||||||||||* targets:1642   CCUCGAUGAGUUCUACAACUUUGG   1665 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013170A09, full insert sequence	NA	coding protein	psRNATarget
AK121156.1	ncRNA:24   GGAGCUACGCUAGAUGUUGAAACA   1   =|||*||**|*||||||||||||| targets:287   UCUCAAUAAGUUCUACAACUUUGU   310 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023079A20, full insert sequence	NA	coding protein	psRNATarget