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BaseInfo

ncRNA ID	novel_osa_miR2335
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:23157440-23157661 [-]
Reference genome	IRGSP-1.0
Source	SRR1849772;SRR2040383;SRR2040387;SRR2040392;SRR2040397;SRR2040401;SRR2040402;SRR2040403;SRR2040404;SRR2040406;SRR2040407;SRR2040409;SRR2040410;SRR3123650;SRR1738239
Length	24
Mature sequence(if miRNA)	1 - AAUCUAUGUUUAAUACUCUAAAUU - 24
Stem-loop(if miRNA)	--                    -CU    A     UA         AUAA AG     C                 AA   -      AU        AUUA    UUUACUUU   UUUGGAGUAUUGAAUAUAGA   AAUA AAAAU  AUUUCAUAA    G  UUAAU CGUGAGACGAAUUUUUU  GAC UAAUUA  CUAUGAUU    AAAG        A   ||||||||||||||||||||   |||| |||||  |||||||||    |  ||||| |||||||||||||||||  ||| ||||||  ||||||||    ||||   AAAUCUCAUAAUUUGUAUCU   UUAU UUUUG  UAAAGUAUU    C  GAUUA GCGCUCUGCUUAGAAAA  UUG AUUAAU  GGUACUAA    UUGU        G UU                    AAU    G     UG         GGAA CU     A                 -C   U      GU        ---A    UACACUAC
Stem-loop sequence	UUUGGAGUAUUGAAUAUAGACUAAUAAAAAAUUAAUUUCAUAAAUAAGAGUUAAUCCGUGAGACGAAUUUUUUAAGACUAAUUAAUCUAUGAUUAUUAAAAGUUUACUUUAGCAUCACAUUGUUAAAUCAUGGUGUAAUUAUGUUCAAAAGAUUCGUCUCGCGAAUUAGUCCAAGGUUAUGAAAUGUGUUUUGUAUUUAAUCUAUGUUUAAUACUCUAAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015781196.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||||||||||||||||||||*| targets:2009   AAUUUAGAGUAUUAAACAUAGACU   2032 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group GATA transcription factor 6 (LOC4336532), mRNA	GATA transcription factor 6(LOC4336532)	coding protein	psRNATarget
AK288948.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||||||||||||||||||||*| targets:2591   AAUUUAGAGUAUUAAACAUAGACU   2614 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence	NA	coding protein	psRNATarget
AK288241.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||||||||||||||||||||*| targets:529   AAUUUAGAGUAUUAAACAUAGACU   552 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence	NA	coding protein	psRNATarget
AK100185.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   |||||=||||||||||||||*||| targets:667   AAUUUGGAGUAUUAAACAUACAUU   690 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023031M16, full insert sequence	NA	coding protein	psRNATarget
AK102033.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   |||||=||||||||||||||||*| targets:287   AAUUUGGAGUAUUAAACAUAGACU   310 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033081B10, full insert sequence	NA	coding protein	psRNATarget
AK240978.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||-|||||=|||||||||||*| targets:353   AAUU-AGAGUGUUAAACAUAGACU   375 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065048J02, full insert sequence	NA	coding protein	psRNATarget