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BaseInfo

ncRNA ID	novel_osa_miR2328
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:8913575-8913746 [-]
Reference genome	IRGSP-1.0
Source	SRR1849772
Length	24
Mature sequence(if miRNA)	1 - AUCUACGUUUAAUACUUCUAAAUA - 24
Stem-loop(if miRNA)	--                                  AC                           U            C   GAUU   UUUAGAAGUAUUAAACGUAGAUUAUUGGCAAAAC  AUUCCAUAACCCCUAGGUUAUUUUGCG GAUGAAUCUAAU AUG    A   ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||| |||   AAAUCUUCAUAAUUUGCAUCUAAUGGCUGUUUUG  UAAGGUAUUGGGGAUCCGAUAAAACGC CUGCUUAGAUUA UAC    A AU                                  GC                           U            C   AUAU
Stem-loop sequence	UUUAGAAGUAUUAAACGUAGAUUAUUGGCAAAACACAUUCCAUAACCCCUAGGUUAUUUUGCGUGAUGAAUCUAAUCAUGGAUUAAUAUACAUCAUUAGAUUCGUCUCGCAAAAUAGCCUAGGGGUUAUGGAAUCGGUUUUGUCGGUAAUCUACGUUUAAUACUUCUAAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015790190.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   |||||||||*|||||||||||||| targets:4157   UAUUUAGAAUUAUUAAACGUAGAU   4180 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277841 (LOC107277841), mRNA	uncharacterized LOC107277841(LOC107277841)	coding protein	psRNATarget
HI404232.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ||*||||||||||||||||||*|| targets:32   UAAUUAGAAGUAUUAAACGUAAAU   55 Target Full Sequence	1.5	Sequence 2357 from Patent EP2074227	NA	coding protein	psRNATarget
JB164693.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ||*||||||||||||||||||*|| targets:32   UAAUUAGAAGUAUUAAACGUAAAU   55 Target Full Sequence	1.5	Sequence 2357 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236362.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ||*||||||||||||||||||*|| targets:32   UAAUUAGAAGUAUUAAACGUAAAU   55 Target Full Sequence	1.5	Sequence 2357 from Patent EP2985353	NA	coding protein	psRNATarget
AK289141.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ||*||||||||||||||||||*|* targets:263   UAAUUAGAAGUAUUAAACGUACAC   286 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090099F05, full insert sequence	NA	coding protein	psRNATarget
CT828939.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ***||||||||||||||||||*|* targets:263   ACAUUAGAAGUAUUAAACGUAUAC   286 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN079O18, full insert sequence	NA	coding protein	psRNATarget
AK059380.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ||*|||*||*|||||||||||||* targets:421   UAAUUAUAAAUAUUAAACGUAGAC   444 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-026-G01, full insert sequence	NA	coding protein	psRNATarget
AK107903.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ||*|||*||*|||||||||||||* targets:501   UAAUUAUAAAUAUUAAACGUAGAC   524 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-134-F10, full insert sequence	NA	coding protein	psRNATarget
CT837623.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ||*|||*||*|||||||||||||* targets:515   UAAUUAUAAAUAUUAAACGUAGAC   538 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN019I07, full insert sequence	NA	coding protein	psRNATarget
AK101454.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ||*|||*||*|||||||||||||* targets:1021   UAAUUAUAAAUAUUAAACGUAGAC   1044 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033040A11, full insert sequence	NA	coding protein	psRNATarget
XM_015766175.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ||*|||*||*|||||||||||||* targets:1015   UAAUUAUAAAUAUUAAACGUAGAC   1038 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group putative methyltransferase DDB_G0268948 (LOC4325584), mRNA	putative methyltransferase DDB_G0268948(LOC4325584)	coding protein	psRNATarget
AK064594.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ||*|||*||*|||||||||||||* targets:497   UAAUUAUAAAUAUUAAACGUAGAC   520 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-112-G08, full insert sequence	NA	coding protein	psRNATarget
CT831158.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ||*|||*||*|||||||||||||* targets:576   UAAUUAUAAAUAUUAAACGUAGAC   599 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA044E09, full insert sequence	NA	coding protein	psRNATarget
AK288164.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ||*|||*||*|||||||||||||* targets:1002   UAAUUAUAAAUAUUAAACGUAGAC   1025 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090002E02, full insert sequence	NA	coding protein	psRNATarget
AK288202.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ||*|||*||*|||||||||||||* targets:1002   UAAUUAUAAAUAUUAAACGUAGAC   1025 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090008J03, full insert sequence	NA	coding protein	psRNATarget
AK064790.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ||*|||*||*|||||||||||||* targets:2279   UAAUUAUAAAUAUUAAACGUAGAC   2302 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013000C06, full insert sequence	NA	coding protein	psRNATarget
XM_015777574.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ||*|||*||*|||||||||||||* targets:2294   UAAUUAUAAAUAUUAAACGUAGAC   2317 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4334447 (LOC4334447), mRNA	uncharacterized LOC4334447(LOC4334447)	coding protein	psRNATarget
AK288638.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ||*|||*||*|||||||||||||* targets:238   UAAUUAUAAAUAUUAAACGUAGAC   261 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090055N09, full insert sequence	NA	coding protein	psRNATarget
CT834429.1	ncRNA:24   AUAAAUCUUCAUAAUUUGCAUCUA   1   ||*|||*||*|||||||||||||* targets:1301   UAAUUAUAAAUAUUAAACGUAGAC   1324 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA203L19, full insert sequence	NA	coding protein	psRNATarget