Search result

BaseInfo

ncRNA ID	novel_osa_miR2324
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:25476822-25476938 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1849773;SRR2040381;SRR2097779;SRR2098822;SRR2099567;SRR1555751;SRR2099745;SRR2099746;SRR1556011;SRR3123645;SRR3123646;SRR3123651;SRR3234040;SRR1556014;SRR4407775;SRR4407777;SRR4407779;SRR4407955;SRR4407956;SRR4407958;SRR4407959;SRR4407961;SRR5351738;SRR1556018;SRR1654490;SRR1654491;SRR1738226;SRR1738228;SRR1738240
Length	21
Mature sequence(if miRNA)	97 - AUCAUGCAUGACAGCCUCAUU - 117
Stem-loop(if miRNA)	--   A    C  -            UC     A  CG    --UG      UAC    G   UGA GCUG CA GCAUGAUCUAGC  UGAUU AU  GCAC    UUGGCG   AGUC A   ||| |||| || ||||||||||||  ||||| ||  ||||    ||||||   ||||   ACU CGAC GU CGUACUAGAUUG  ACUAA UG  UGUG    GACUGC   UCAG U UU   C    A  A            UC     A  UG    UCUA      UAA    U
Stem-loop sequence	UGAAGCUGCCAGCAUGAUCUAGCUCUGAUUAAUCGGCACUGUUGGCGUACAGUCGAUUGACUAAUCGUCAGAUCUGUGUGUGUAAAUCACUGUUAGAUCAUGCAUGACAGCCUCAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK073440.1	ncRNA:21   UUACUCCGACAGUACGUACUA   1   |||||||||||||||||||=* targets:628   AAUGAGGCUGUCAUGCAUGGC   648 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033046F03, full insert sequence	NA	coding protein	psRNATarget
XM_015772729.1	ncRNA:21   UUACUCCGACAGUACGUACUA   1   |||||||||||||||||||=* targets:664   AAUGAGGCUGUCAUGCAUGGC   684 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tryptophan synthase alpha chain (LOC4334425), transcript variant X1, mRNA	tryptophan synthase alpha chain(LOC4334425)	coding protein	psRNATarget
XM_015772730.1	ncRNA:21   UUACUCCGACAGUACGUACUA   1   |||||||||||||||||||=* targets:664   AAUGAGGCUGUCAUGCAUGGC   684 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tryptophan synthase alpha chain (LOC4334425), transcript variant X2, mRNA	tryptophan synthase alpha chain(LOC4334425)	coding protein	psRNATarget
XM_015758011.1	ncRNA:21   UUACUCCGACAGUACGUACUA   1   =*||||||||*|||||||||* targets:2099   GCUGAGGCUGACAUGCAUGAG   2119 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348002 (LOC4348002), mRNA	uncharacterized LOC4348002(Os10g0121534)	coding protein	psRNATarget