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BaseInfo

ncRNA ID	novel_osa_miR2317
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:6366383-6366454 [+]
Reference genome	IRGSP-1.0
Source	SRR1849771
Length	24
Mature sequence(if miRNA)	1 - ACCGGGACUAAAGAUCAUAGAAUG - 24
Stem-loop(if miRNA)	--               C   GAA     G   GGU   ACCGGGACUAAAGAU AUA   UGGCU UGG   U   ||||||||||||||| |||   ||||| |||   U   UGGCCCUGAUUUUUA UAU   AUCGG ACC   U CU               C   -AA     G   AAC
Stem-loop sequence	ACCGGGACUAAAGAUCAUAGAAUGGCUGUGGGGUUUUCAACCAGGGCUAAAUAUCAUUUUUAGUCCCGGUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB164747.1	ncRNA:24   GUA-AGA--UACUAGAAAUCAGGGCCA   1   *||-|||--|||||||||||||||||| targets:31   AAUAUCUGCAUGAUCUUUAGUCCCGGU   57 Target Full Sequence	2.5	Sequence 2411 from Patent EP2559767	NA	coding protein	psRNATarget
HI404286.1	ncRNA:24   GUA-AGA--UACUAGAAAUCAGGGCCA   1   *||-|||--|||||||||||||||||| targets:31   AAUAUCUGCAUGAUCUUUAGUCCCGGU   57 Target Full Sequence	2.5	Sequence 2411 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236416.1	ncRNA:24   GUA-AGA--UACUAGAAAUCAGGGCCA   1   *||-|||--|||||||||||||||||| targets:31   AAUAUCUGCAUGAUCUUUAGUCCCGGU   57 Target Full Sequence	2.5	Sequence 2411 from Patent EP2985353	NA	coding protein	psRNATarget
AK061057.1	ncRNA:24   GUAAGAUACUAGAAAUCAGGGCCA   1   =*****|||||||||||||||||| targets:240   UUAAAAAUGAUCUUUAGUCCCGGU   263 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:24   GUAAGAUACUAGAAAUCAGGGCCA   1   |*****|||||||||||||||||| targets:2373   CUAAAAAUGAUCUUUAGUCCCGGU   2396 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   GUAAGAUACUAGAAAUCAGGGCCA   1   |*****|||||||||||||||||| targets:417   CUACAAAUGAUCUUUAGUCCCGGU   440 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   GUAAGAUACUAGAAAUCAGGGCCA   1   *=**|*|*|||||||||||||||| targets:547   GGGCCGAGGAUCUUUAGUCCCGGU   570 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   GUAAGAUACUAGAAAUCAGGGCCA   1   |*****|||||=|||||||||||| targets:1583   CUAAAGAUGAUUUUUAGUCCCGGU   1606 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
AK288224.1	ncRNA:24   GUAAGAUACUAGAAAUCAGGGCCA   1   |***||**|||||||||||||||| targets:1252   CCCCCUCGGAUCUUUAGUCCCGGU   1275 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288598.1	ncRNA:24   GUAAGAUACUAGAAAUCAGGGCCA   1   =|**=||*|||||||||||||||| targets:962   UAAGUUACGAUCUUUAGUCCCGGU   985 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
XM_015774888.1	ncRNA:24   GUAAGAUACUAGAAAUCAGGGCCA   1   |*****|||||||*|||||||||| targets:1379   CUAAAAAUGAUCUCUAGUCCCGGU   1402 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774887.1	ncRNA:24   GUAAGAUACUAGAAAUCAGGGCCA   1   |*****|||||||*|||||||||| targets:1385   CUAAAAAUGAUCUCUAGUCCCGGU   1408 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
AK066662.1	ncRNA:24   GUAAGAUAC-UAGAAAUCAGGGCCA   1   |*****|||-||||||||||||||| targets:646   CUAAAAAUGUAUCUUUAGUCCCGGU   670 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013071A17, full insert sequence	NA	coding protein	psRNATarget
XM_015755226.1	ncRNA:24   GUAA-----GAUACUAGAAAUCAGGGCCA   1   *|||-----=*|*|||||||||||||||| targets:57   GAUUAAAGAUGAGGAUCUUUAGUCCCGGU   85 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278786 (LOC107278786), mRNA	uncharacterized LOC107278786(LOC107278786)	coding protein	psRNATarget
AK288796.1	ncRNA:24   GUAAGAUA-CUAGAAAUCAGGGCCA   1   |*****||-|||||||||||||||| targets:1821   CUAAAGAUCGAUCUUUAGUCCCGGU   1845 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:24   GUAAGAUACUAGAAAUCAGGGCCA   1   *|***||*|||||||||||||||* targets:1783   AAAGAUAGGAUCUUUAGUCCCGGG   1806 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
XM_015755884.1	ncRNA:24   GUAAGAUACUAGAAAUCAGGGCCA   1   ****|*||*||||||||||||||| targets:1366   GCCCCAAUUAUCUUUAGUCCCGGU   1389 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
AK288859.1	ncRNA:24   GUAAGAUACUAGAAAUCAGGGCCA   1   |=****|*|||||||||||||||| targets:2189   CGGGAAAAGAUCUUUAGUCCCGGU   2212 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget