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BaseInfo

ncRNA ID	novel_osa_miR2316
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:3047138-3047319 [-]
Reference genome	IRGSP-1.0
Source	SRR1849771
Length	23
Mature sequence(if miRNA)	160 - UUAAAGUCAAACUGCUUCAAGUU - 182
Stem-loop(if miRNA)	--                           C  A        AAAA C         CU    ---AU     A  AA       UAAAAAU   UU   UUAAAGUCAAACUGCUUCAAGUUUGAC AA UUUAUAGA    A AUAGUAAUA  UUCA     CCAAG UA  UUUAUUA       ACA  U   ||||||||||||||||||||||||||| || ||||||||    | |||||||||  ||||     ||||| ||  |||||||       |||   AAUUUCAGUUUGACGAAGUUCAAACUG UU GAAUAUCU    U UAUCAUUAU  AAGU     GGUUU AU  AAAUAAU       UGU  A CC                           A  C        ---G A         --    GUAAU     A  CA       --UUAAU   UA
Stem-loop sequence	UUAAAGUCAAACUGCUUCAAGUUUGACCAAAUUUAUAGAAAAAACAUAGUAAUACUUUCAAUCCAAGAUAAAUUUAUUAUAAAAAUACAUUUAAUUGUUAAUUUAAUAAAACUAAUUUGGUAAUGUGAAUAUUACUAUAUGUCUAUAAGCUUAGUCAAACUUGAAGCAGUUUGACUUUAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837874.1	ncRNA:23   UUGAACUUCGUCAAACUGAAAUU   1   |||||||||||||||||||||=| targets:307   AACUUGAAGCAGUUUGACUUUGA   329 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN062A18, full insert sequence	NA	coding protein	psRNATarget
AK066719.1	ncRNA:23   UUGAACUUCGUCAAACUGAAAUU   1   |||||||||||||||||||||*| targets:819   AACUUGAAGCAGUUUGACUUUCA   841 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013082K18, full insert sequence	NA	coding protein	psRNATarget
AK288396.1	ncRNA:23   UUGAACUUCGUCAAACUGAAAUU   1   ||*||||||||||||||||||=| targets:573   AAGUUGAAGCAGUUUGACUUUGA   595 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090027N23, full insert sequence	NA	coding protein	psRNATarget
AK288635.1	ncRNA:23   UUGAACUUCGUCAAACUGAAAUU   1   |||||*||||||*|||||||||| targets:563   AACUUUAAGCAGAUUGACUUUAA   585 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090055J05, full insert sequence	NA	coding protein	psRNATarget
AK288313.1	ncRNA:23   UUGAACUUCGUCAAACUGAAAUU   1   ||=|||||*||||||||||||*| targets:1015   AAUUUGAAACAGUUUGACUUUUA   1037 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090021D10, full insert sequence	NA	coding protein	psRNATarget
AK065615.1	ncRNA:23   UUGAACUUCGUCAAACUGAAAUU   1   ||=||*||**||||||||||||| targets:3009   AAUUUAAAUAAGUUUGACUUUAA   3031 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013026B17, full insert sequence	NA	coding protein	psRNATarget