A ncRNA database for oil producing plants

Search result

ncRNA ID	novel_osa_miR2312
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:22171702-22171887 [-]
Reference genome	IRGSP-1.0
Source	SRR1849771
Length	24
Mature sequence(if miRNA)	163 - GUUAAAGUCAAACUACUCUAAGUU - 186
Stem-loop(if miRNA)	-- A U - AGACA AUGAAAAUGUAUUC GUUAAAGUCAAACUACUCUAAGUUUGACUAAUUUUGUAGAAAAAA GUAGUAAUAUUU UAAC CCA AAUAUAUU A \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\| \|\|\|\|\|\|\|\| CAGUUUCAGUUUGAUGAGAUUCAAACUGAUUAAGAUAUCUUUUUU CAUCAUUAUAAA GUUG GGU GUAUCAAA A AC - U U ----C GUAAUUUAGAUAUU
Stem-loop sequence	GUUAAAGUCAAACUACUCUAAGUUUGACUAAUUUUGUAGAAAAAAAGUAGUAAUAUUUUUAACCCAAGACAAAUAUAUUAUGAAAAUGUAUUCAAUUAUAGAUUUAAUGAAACUAUGCUGGUGUUGUAAAUAUUACUACUUUUUUCUAUAGAAUUAGUCAAACUUAGAGUAGUUUGACUUUGACCA

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

AK288417.1

1.5

Oryza sativa Japonica Group cDNA, clone: J090031J18, full insert sequence

coding protein

CT835003.1

0.0

Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN054K08, full insert sequence

coding protein

CT833782.1

ncRNA:24	UU-GAAUCUCAUCAAACUGAAAUUG	1
	\|\|-\|\|\|\|*\|\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|
targets:785	AAUCUUAAAGUAGUUUGACUUUGAC	809

2.5

Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN045G22, full insert sequence

coding protein

AK065615.1

3.0

Oryza sativa Japonica Group cDNA clone:J013026B17, full insert sequence

coding protein