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BaseInfo

ncRNA ID	novel_osa_miR2311
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:14156120-14156294 [-]
Reference genome	IRGSP-1.0
Source	SRR1849771
Length	24
Mature sequence(if miRNA)	1 - GUCAAACAUUGAUUAAAAAGUCAA - 24
Stem-loop(if miRNA)	--A         -   AC       CU  UA            AA         U     -UU     -UA UG  ----------       U    ACUUUUUGA CAA  GUUUGAC  UU  UCUUAUUCAAAA  UUUAUGUAA UAUAA   UAUUU   U  UG          AUUUGAU U    ||||||||| |||  |||||||  ||  ||||||||||||  ||||||||| |||||   |||||   |  ||          ||||||| A    UGAAAAAUU GUU  CAAACUG  GA  AGAAUAAGUUUU  AAAUACGUU AUAUU   AUGAA   A  AC          UAAACUA U AAC         A   -A       AU  GC            AA         U     UUU     UAC GU  GAAUUUCUUA       C
Stem-loop sequence	AACUUUUUGACAAACGUUUGACCUUUUAUCUUAUUCAAAAAAUUUAUGUAAUUAUAAUUUAUUUUAUUGUGAUUUGAUUUAUCAUCAAAUAUUCUUUAAGCAUGACAUAAGUAUUUUUAUAUUUGCAUAAAAAUUUUGAAUAAGACGAGUAGUCAAACAUUGAUUAAAAAGUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT828227.1	ncRNA:24   AACUGAAAAAUUAGUUACAAACUG   1   ||||||||||||||||*||||||| targets:1115   UUGACUUUUUAAUCAACGUUUGAC   1138 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015L21, full insert sequence	NA	coding protein	psRNATarget
AK288521.1	ncRNA:24   AACUGAAAAAUUAGUUACAAACUG   1   ||||=|||||*|||||*||||||| targets:71   UUGAUUUUUUUAUCAACGUUUGAC   94 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090044A07, full insert sequence	NA	coding protein	psRNATarget
XM_015768863.1	ncRNA:24   AACUGAAAAAUUAGUUACAAACUG   1   ||||=|||||*|||||*||||||| targets:65   UUGAUUUUUUUAUCAACGUUUGAC   88 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279962 (LOC107279962), mRNA	uncharacterized LOC107279962(LOC107279962)	coding protein	psRNATarget
AK109584.1	ncRNA:24   AACU--GAAAAAUUAGUUACAAACUG   1   ||||--=|||||*||||||||||||= targets:962   UUGAGUUUUUUUUAUCAAUGUUUGAU   987 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-137-A10, full insert sequence	NA	coding protein	psRNATarget