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BaseInfo

ncRNA ID	novel_osa_miR2308
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:4624726-4624915 [-]
Reference genome	IRGSP-1.0
Source	SRR1849771
Length	24
Mature sequence(if miRNA)	167 - AACGUAGAUUACUGACAAAACUCA - 190
Stem-loop(if miRNA)	--                    C   -        U                                 U          C      U  UACAGU   AACGUAGAUUACUGACAAAA UCA UUCCAUAA CCCUAGGCUAUUUUGUGAGACGAAUCUAACGAG UAUAUUAAUC AUGAUU GC      A   |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||| ||   UUGCAUCUAAUGACUGUUUU AGU AAGGUAUU GGGAUCCGAUAAAACGCUCUGCUUAGAUUGCUC AUAUAAUUAG UACUAA CG      A AU                    -   U        U                                 C          A      U  CCUACU
Stem-loop sequence	AACGUAGAUUACUGACAAAACUCAUUCCAUAAUCCCUAGGCUAUUUUGUGAGACGAAUCUAACGAGUUAUAUUAAUCCAUGAUUUGCUACAGUAAUCAUCCGCUAAUCAUAGAUUAAUAUACCUCGUUAGAUUCGUCUCGCAAAAUAGCCUAGGGUUUAUGGAAUUGAUUUUGUCAGUAAUCUACGUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015762321.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |||*||||*||||||||||||||| targets:1109   UGAAUUUUAUCAGUAAUCUACGUU   1132 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group transcription initiation factor TFIID subunit 13 (LOC9268703), mRNA	transcription initiation factor TFIID subunit 13(LOC9268703)	coding protein	psRNATarget
AK240978.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |*||||||||*|||||||||=||| targets:540   UUAGUUUUGUAAGUAAUCUAUGUU   563 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065048J02, full insert sequence	NA	coding protein	psRNATarget
XM_015781418.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |*=|||||*|||||||||||=||| targets:1305   UAGGUUUUAUCAGUAAUCUAUGUU   1328 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group serine/arginine repetitive matrix protein 1 (LOC4335446), mRNA	serine/arginine repetitive matrix protein 1(LOC4335446)	coding protein	psRNATarget
AK107263.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |*=|||||*|||||||||||=||| targets:1216   UAGGUUUUAUCAGUAAUCUAUGUU   1239 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-125-H03, full insert sequence	NA	coding protein	psRNATarget
XM_015766387.1	ncRNA:24   ACUCAAAACAGUCAUUAGAUGCAA   1   |**|||||||=|*||||||||||| targets:21   UUUGUUUUGUUAUUAAUCUACGUU   44 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325753 (LOC4325753), mRNA	uncharacterized LOC4325753(LOC4325753)	coding protein	psRNATarget