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BaseInfo

ncRNA ID	novel_osa_miR2305
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:1916243-1916304 [-]
Reference genome	IRGSP-1.0
Source	SRR1849771;SRR1849775;SRR2040409;SRR3123648;SRR3234045;SRR5049778;SRR5049786;SRR5049790;SRR1738209;SRR1738210;SRR1738211;SRR1738235
Length	24
Mature sequence(if miRNA)	39 - GACUUUGUCACUGACAUGUGGACC - 62
Stem-loop(if miRNA)	-- AC          A       A C  AUG   G  UUUGUCACUG CAUGUGG C CG   A   |  |||||||||| ||||||| | ||   C  AAACAGUGAC GUACACC G GU   U UA GA          C       C A  CCC
Stem-loop sequence	GACUUUGUCACUGACAUGUGGACCCGAUGAUCCCUGAGCCCACAUGCCAGUGACAAAAGCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK109153.1	ncRNA:24   CCAGGUGUACAGUCACUGUUUCAG   1   ||*=|||||||=|||||||||||| targets:1342   GGCUCACAUGUUAGUGACAAAGUC   1365 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-155-F12, full insert sequence	NA	coding protein	psRNATarget
CT831335.1	ncRNA:24   CCAGGUGUACAGUCACUGUUUCAG   1   ||*=|||||||=|||||||||||| targets:1396   GGCUCACAUGUUAGUGACAAAGUC   1419 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA015D18, full insert sequence	NA	coding protein	psRNATarget
XM_015783779.1	ncRNA:24   CCAGGUGUACAGUCACUGUUUCAG   1   ||*=|||||||=|||||||||||| targets:1564   GGCUCACAUGUUAGUGACAAAGUC   1587 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339114 (LOC4339114), transcript variant X2, mRNA	uncharacterized LOC4339114(LOC4339114)	coding protein	psRNATarget
XM_015783778.1	ncRNA:24   CCAGGUGUACAGUCACUGUUUCAG   1   ||*=|||||||=|||||||||||| targets:1656   GGCUCACAUGUUAGUGACAAAGUC   1679 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339114 (LOC4339114), transcript variant X1, mRNA	uncharacterized LOC4339114(LOC4339114)	coding protein	psRNATarget
XM_015787285.1	ncRNA:24   CCAGG-UGUACAGUCACUGUUUCAG   1   |||||-|||*||||||||||||||| targets:1029   GGUCCCACACGUCAGUGACAAAGUC   1053 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group very-long-chain 3-oxoacyl-CoA reductase 1-like (LOC107276302), mRNA	very-long-chain 3-oxoacyl-CoA reductase 1-like(LOC107276302)	coding protein	psRNATarget
HI404072.1	ncRNA:24   CC-AGGUGUACAGUCACUGUUUCAG   1   ||-|||||||||*|||||||||||= targets:38   GGAUCCACAUGUAAGUGACAAAGUU   62 Target Full Sequence	2.5	Sequence 2197 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236202.1	ncRNA:24   CC-AGGUGUACAGUCACUGUUUCAG   1   ||-|||||||||*|||||||||||= targets:38   GGAUCCACAUGUAAGUGACAAAGUU   62 Target Full Sequence	2.5	Sequence 2197 from Patent EP2985353	NA	coding protein	psRNATarget
JB164533.1	ncRNA:24   CC-AGGUGUACAGUCACUGUUUCAG   1   ||-|||||||||*|||||||||||= targets:38   GGAUCCACAUGUAAGUGACAAAGUU   62 Target Full Sequence	2.5	Sequence 2197 from Patent EP2559767	NA	coding protein	psRNATarget