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BaseInfo

ncRNA ID	novel_osa_miR2297
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:26243021-26243117 [-]
Reference genome	IRGSP-1.0
Source	SRR1849771
Length	21
Mature sequence(if miRNA)	77 - AAAUAUAAGGUAUUUUGACUG - 97
Stem-loop(if miRNA)	--                 AC           C        ---C  UCU   AAAUAUAAGGUAUUUUG  UGGAUGGGACA AUUCUAGU    UG   A   |||||||||||||||||  ||||||||||| ||||||||    ||   UUUAUAUUCCAUGAAAC  AUCUACCUUGU UAGGAUCA    AC   U GU                 GA           A        UUAU  UUA
Stem-loop sequence	AAAUAUAAGGUAUUUUGACUGGAUGGGACACAUUCUAGUCUGUCUAUAUUCAUAUUACUAGGAUAUGUUCCAUCUAAGCAAAGUACCUUAUAUUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015773665.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   |||||||||||=||||||||| targets:1845   CAGUCAAAAUAUCUUAUAUUU   1865 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327635 (LOC4327635), mRNA	uncharacterized LOC4327635(LOC4327635)	coding protein	psRNATarget
AK106837.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   |||||||||||=||||||||| targets:1603   CAGUCAAAAUAUCUUAUAUUU   1623 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-116-G08, full insert sequence	NA	coding protein	psRNATarget
AK072098.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   =||||||||||||||||||*| targets:3348   UAGUCAAAAUACCUUAUAUGU   3368 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013118F23, full insert sequence	NA	coding protein	psRNATarget
AK289130.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   ==||=|||||||||||||*|| targets:2767   UGGUUAAAAUACCUUAUACUU   2787 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090098I23, full insert sequence	NA	coding protein	psRNATarget
XM_015795843.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   ==|*||||||=|||||||||| targets:2364   UGGGCAAAAUGCCUUAUAUUU   2384 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At5g56310 (LOC4347034), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At5g56310(LOC4347034)	coding protein	psRNATarget
AK111456.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   ==|*||||||=|||||||||| targets:2267   UGGGCAAAAUGCCUUAUAUUU   2287 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-183-C05, full insert sequence	NA	coding protein	psRNATarget
XM_015787737.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   |**|=|||||||||||||||| targets:1826   CCUUUAAAAUACCUUAUAUUU   1846 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340237 (LOC4340237), mRNA	uncharacterized LOC4340237(LOC4340237)	coding protein	psRNATarget
XM_015761216.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   *|*|||||||||||||||||* targets:1462   AAAUCAAAAUACCUUAUAUUG   1482 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X3, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
XM_015761224.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   *|*|||||||||||||||||* targets:1436   AAAUCAAAAUACCUUAUAUUG   1456 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X4, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
XM_015761204.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   *|*|||||||||||||||||* targets:1391   AAAUCAAAAUACCUUAUAUUG   1411 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X1, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
XM_015761210.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   *|*|||||||||||||||||* targets:1358   AAAUCAAAAUACCUUAUAUUG   1378 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X2, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
AK106768.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   *|||||||||*|||||||||* targets:320   AAGUCAAAAUCCCUUAUAUUA   340 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-115-F05, full insert sequence	NA	coding protein	psRNATarget
XM_015767396.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   ==||||||||*|||||||||* targets:3979   UGGUCAAAAUCCCUUAUAUUG   3999 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g21300 (LOC9271215), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At4g21300(LOC9271215)	coding protein	psRNATarget
XM_015767397.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   ==||||||||*|||||||||* targets:3834   UGGUCAAAAUCCCUUAUAUUG   3854 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g21300 (LOC9271215), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At4g21300(LOC9271215)	coding protein	psRNATarget
XM_015767398.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   ==||||||||*|||||||||* targets:3831   UGGUCAAAAUCCCUUAUAUUG   3851 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At4g21300 (LOC9271215), transcript variant X5, mRNA	pentatricopeptide repeat-containing protein At4g21300(LOC9271215)	coding protein	psRNATarget
AK242301.1	ncRNA:21   GUCAG-UUUUAUGGAAUAUAAA   1   *|*||-|||||||||||||||| targets:818   AACUCUAAAAUACCUUAUAUUU   839 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J075192P18, full insert sequence	NA	coding protein	psRNATarget
AK119374.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   **||||=|||||*|||||||| targets:2422   AUGUCAGAAUACGUUAUAUUU   2442 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-132-A05, full insert sequence	NA	coding protein	psRNATarget
AK119374.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   **||||=|||||*|||||||| targets:2560   AUGUCAGAAUACGUUAUAUUU   2580 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-132-A05, full insert sequence	NA	coding protein	psRNATarget
AK073031.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   ==|*||||||*|||||||||| targets:205   UGGGCAAAAUCCCUUAUAUUU   225 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023147F20, full insert sequence	NA	coding protein	psRNATarget
CT837645.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   **||||||||*|||||||||* targets:631   AUGUCAAAAUCCCUUAUAUUA   651 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063B15, full insert sequence	NA	coding protein	psRNATarget
AK287616.1	ncRNA:21   GUCAGUUUUAUGGAAUAUAAA   1   *=|*||||||*|||||||||| targets:371   GGGCCAAAAUCCCUUAUAUUU   391 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065064I17, full insert sequence	NA	coding protein	psRNATarget