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BaseInfo

ncRNA ID novel_osa_miR2291
Species Oryza sativa
Class miRNA
Genome position Chr5:18923941-18924024 [+]
Reference genome IRGSP-1.0
Source SRR1849771
Length 24
Mature sequence(if miRNA) 61 - AGUGGGACUCGGAGAUAUCGGACC - 84
Stem-loop(if miRNA) --           -A     UG CC -  GGGUCCCUUUUAUA
  UUCGAUGUCUU  GGUCC  C  G GG              C
  |||||||||||  |||||  |  | ||
  AGGCUAUAGAG  UCAGG  G  C UC              C
CC           GC     GU AA C  UAGUUGACUAGGCG
Stem-loop sequence UUCGAUGUCUUAGGUCCUGCCCGGGGGGUCCCUUUUAUACCGCGGAUCAGUUGAUCUCCAAGUGGGACUCGGAGAUAUCGGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015793139.1
ncRNA:24   CCAGGCUAUAGAGGCUCAGGGUGA   1
  ||||||||||||||||||||=|||
targets:901   GGUCCGAUAUCUCCGAGUCCUACU   924

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107276863 (LOC107276863), mRNA uncharacterized LOC107276863(LOC107276863) coding protein psRNATarget
AK288799.1
ncRNA:24   CCAGGCUAUAGAGGCUCAGGGUGA   1
  ||||||||||||||||||||=|||
targets:4788   GGUCCGAUAUCUCCGAGUCCUACU   4811

1.5 Oryza sativa Japonica Group cDNA, clone: J090070K11, full insert sequence NA coding protein psRNATarget