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BaseInfo

ncRNA ID	novel_osa_miR2285
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:22426831-22427061 [+]
Reference genome	IRGSP-1.0
Source	SRR1849771
Length	20
Mature sequence(if miRNA)	1 - UAUUAUAAGACGUUUUGACU - 20
Stem-loop(if miRNA)	--U    U                               AC                   A    C   UAUAU        A    A     -UU     C    AAUCAAUAAU    UA    AUUA AAGACGUUUUGACUUUGGUCAAAGUUAAACU  UUUAAAUUUGACUAAGUUU UAGA AAA     UAAUAUUU UAAU CCAAA   AGUUU AUUA          UGAA  U    |||| |||||||||||||||||||||||||||||||  ||||||||||||||||||| |||| |||     |||||||| |||| |||||   ||||| ||||          ||||    UAAU UUUUGCAAAACUGAAACCAGUUUCAAUUUGA  AAAUUUAAACUGAUUCAAA AUCU UUU     AUUAUAAA GUUG GGUUU   UUAAA UAAU          ACUU  A GUC    U                               CA                   C    U   UAAUU        A    -     UGU     -    ----------    UU
Stem-loop sequence	UAUUAUAAGACGUUUUGACUUUGGUCAAAGUUAAACUACUUUAAAUUUGACUAAGUUUAUAGACAAAUAUAUUAAUAUUUAUAAUACCAAAUUAGUUUCAUUAAAUCAAUAAUUGAAUAUAUUUUCAUAAUAAAUUUGUUUUGGGUUGAAAAUAUUAUUAAUUUUUUCUACAAACUUAGUCAAAUUUAAAACAGUUUAACUUUGACCAAAGUCAAAACGUUUUUUAAUCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015778833.1	ncRNA:20   UCAGUUUUGCAGAAUAUUAU   1   ||||||||||*||||||||| targets:1688   AGUCAAAACGACUUAUAAUA   1707 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280553 (LOC107280553), transcript variant X1, mRNA	uncharacterized LOC107280553(LOC107280553)	coding protein	psRNATarget
CT835003.1	ncRNA:20   UCAGUUUUGCAGAAUAUUAU   1   ||||||||||||||||||** targets:379   AGUCAAAACGUCUUAUAACC   398 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN054K08, full insert sequence	NA	coding protein	psRNATarget
XM_015757710.1	ncRNA:20   UCAGUUUUGCAGAAUAUUAU   1   ||||||||||||||||||** targets:56   AGUCAAAACGUCUUAUAACU   75 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278283 (LOC107278283), mRNA	uncharacterized LOC107278283(LOC107278283)	coding protein	psRNATarget
AK288313.1	ncRNA:20   UCAGUUUUGCAGAAUAUUAU   1   ||||||||||||||||||** targets:1042   AGUCAAAACGUCUUAUAACC   1061 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090021D10, full insert sequence	NA	coding protein	psRNATarget
AK288928.1	ncRNA:20   UCAGUUUUGCAGAAUAUUAU   1   ||||||||||||||||||** targets:1412   AGUCAAAACGUCUUAUAACC   1431 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090082F16, full insert sequence	NA	coding protein	psRNATarget
XM_015758786.1	ncRNA:20   UCAGUUUUGCAGAAUAUUAU   1   =|*||||||||||||||||| targets:758   GGCCAAAACGUCUUAUAAUA   777 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348279 (LOC4348279), transcript variant X2, mRNA	uncharacterized LOC4348279(LOC4348279)	coding protein	psRNATarget
AK289032.1	ncRNA:20   UCAGUUUUGCAGAAUAUUAU   1   |*|||||||||||||||||= targets:1584   ACUCAAAACGUCUUAUAAUG   1603 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090091F21, full insert sequence	NA	coding protein	psRNATarget
XM_015786539.1	ncRNA:20   UCAGUUUUGCAGAAUAUUAU   1   ||||||||||*||||||||* targets:927   AGUCAAAACGACUUAUAAUC   946 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group basic blue protein-like (LOC107277353), mRNA	basic blue protein-like(LOC107277353)	coding protein	psRNATarget
XM_015794737.1	ncRNA:20   UCAGUUUUGCAGAAUAUUAU   1   ||||||||||*||||||||* targets:1695   AGUCAAAACGACUUAUAAUC   1714 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346071 (LOC4346071), mRNA	uncharacterized LOC4346071(LOC4346071)	coding protein	psRNATarget
AK288527.1	ncRNA:20   UCAGUUUUGCAGAAUAUUAU   1   |*|||||||||||||||||* targets:779   AAUCAAAACGUCUUAUAAUC   798 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090044J18, full insert sequence	NA	coding protein	psRNATarget
AK067646.1	ncRNA:20   UCAGUUUUGCAGAAUAUUAU   1   =|*||||||||||||||||= targets:1700   GGCCAAAACGUCUUAUAAUG   1719 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013112D16, full insert sequence	NA	coding protein	psRNATarget
AK110785.1	ncRNA:20   UCAGUUUUGCAGAAUAUUAU   1   **||||||||*||||||||| targets:1281   UAUCAAAACGACUUAUAAUA   1300 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-171-C06, full insert sequence	NA	coding protein	psRNATarget
AK240897.1	ncRNA:20   UCAGUUUUGCAGAAUAUUAU   1   *||||||||*|||||||||* targets:1694   UGUCAAAACAUCUUAUAAUU   1713 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065032L17, full insert sequence	NA	coding protein	psRNATarget