Search result

BaseInfo

ncRNA ID	novel_osa_miR2280
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:14748388-14748441 [+]
Reference genome	IRGSP-1.0
Source	SRR1849771
Length	24
Mature sequence(if miRNA)	31 - AUCCAGAUUUAUUAUAAUAAGAUG - 54
Stem-loop(if miRNA)	--     G  C    U       C  G   UCUUA UA AAUG AUUUGGA AU A   ||||| || |||| ||||||| ||   AGAAU AU UUAU UAGACCU UA U GU     A  A    U       A  U
Stem-loop sequence	UCUUAGUACAAUGUAUUUGGACAUGAUUAUAUCCAGAUUUAUUAUAAUAAGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235839.1	ncRNA:24   GUAGAAUAAUAUUAUUUAGACCUA   1   |||||||||||||||||||||||| targets:16   CAUCUUAUUAUAAUAAAUCUGGAU   39 Target Full Sequence	0.0	Sequence 1834 from Patent EP2985353	NA	coding protein	psRNATarget
HI403709.1	ncRNA:24   GUAGAAUAAUAUUAUUUAGACCUA   1   |||||||||||||||||||||||| targets:16   CAUCUUAUUAUAAUAAAUCUGGAU   39 Target Full Sequence	0.0	Sequence 1834 from Patent EP2074227	NA	coding protein	psRNATarget
JB164170.1	ncRNA:24   GUAGAAUAAUAUUAUUUAGACCUA   1   |||||||||||||||||||||||| targets:16   CAUCUUAUUAUAAUAAAUCUGGAU   39 Target Full Sequence	0.0	Sequence 1834 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015787953.1	ncRNA:24   GUAGAAUAAUAUUAUUUAGACCUA   1   =||=*|||||*||||||||||||| targets:2758   UAUUCUAUUACAAUAAAUCUGGAU   2781 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group U-box domain-containing protein 52 (LOC4340371), transcript variant X1, mRNA	U-box domain-containing protein 52(LOC4340371)	coding protein	psRNATarget