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BaseInfo

ncRNA ID	novel_osa_miR2279
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:3588174-3588354 [-]
Reference genome	IRGSP-1.0
Source	SRR1849771;SRR2040398;SRR5049783
Length	24
Mature sequence(if miRNA)	1 - AAACGUUGCAAGUAAAAACUUAAA - 24
Stem-loop(if miRNA)	--UC           A                        C         C  C    AUAAAAAAUAAAAAG     -     AG  C  U     AGUUUUUGCUU CAACGUUUGACCACUCGUUUUAUU AAAUUUUUU UG AAAU               UUGUG UUUAA  UA UG A     ||||||||||| |||||||||||||||||||||||| ||||||||| || ||||               ||||| |||||  || ||     UCAAAAAUGAA GUUGCAAACUGGUGAGCAGAAUAA UUUAAAAAA AC UUUA               AACAC GAAUU  AU AU G AAAU           C                        A         -  -    AUAAUUAAUAAAAUA     U     AA  A  A
Stem-loop sequence	UCAGUUUUUGCUUACAACGUUUGACCACUCGUUUUAUUCAAAUUUUUUCUGCAAAUAUAAAAAAUAAAAAGUUGUGUUUAAAGUACUGUAGAUAAUAAAUUAAGUCACAAAUAAAAUAAUUAAUAAUUUCAAAAAAAUUUAAAUAAGACGAGUGGUCAAACGUUGCAAGUAAAAACUUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289013.1	ncRNA:24   AAAUUCAAAAAUGAACGUUGCAAA   1   |||=|||||||||||||||||||| targets:3847   UUUGAGUUUUUACUUGCAACGUUU   3870 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:24   AAAUUCAAAAAUGAACGUUGCAAA   1   |||=|||||||||||||||||||| targets:3902   UUUGAGUUUUUACUUGCAACGUUU   3925 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
CT834713.1	ncRNA:24   AAAUUCAAAAAUGAACGUUGCAAA   1   |||||||||||=|||||||||||| targets:487   UUUAAGUUUUUGCUUGCAACGUUU   510 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA008G23, full insert sequence	NA	coding protein	psRNATarget
AK111038.1	ncRNA:24   AAAUUCAAAAAUGAACGUUGCAAA   1   |||=|||||||=|||||||||||| targets:485   UUUGAGUUUUUGCUUGCAACGUUU   508 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-175-A10, full insert sequence	NA	coding protein	psRNATarget
XM_015756113.1	ncRNA:24   AAAUUCAAAAAUGAACGUUGCAAA   1   |||=||||||||||||||||*||| targets:1648   UUUGAGUUUUUACUUGCAACAUUU   1671 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At5g47070 (LOC4347684), mRNA	probable receptor-like protein kinase At5g47070(LOC4347684)	coding protein	psRNATarget
AK288330.1	ncRNA:24   AAAUUCAAAAAUGAACGUUGCAAA   1   |||=|*||||||=||||||||||| targets:1095   UUUGACUUUUUAUUUGCAACGUUU   1118 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090022I21, full insert sequence	NA	coding protein	psRNATarget
XM_015758393.1	ncRNA:24   AAAUUCAAAAAUGAACGUUGCAAA   1   |||=|*||||||=||||||||||| targets:1676   UUUGACUUUUUAUUUGCAACGUUU   1699 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348660 (LOC4348660), mRNA	uncharacterized LOC4348660(LOC4348660)	coding protein	psRNATarget
AK109674.1	ncRNA:24   AAAUUCAAAAAUGAACGUUGCAAA   1   |||=|*||||||=||||||||||| targets:1546   UUUGACUUUUUAUUUGCAACGUUU   1569 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-145-B06, full insert sequence	NA	coding protein	psRNATarget