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BaseInfo

ncRNA ID	novel_osa_miR2275
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:22078810-22078889 [+]
Reference genome	IRGSP-1.0
Source	SRR1849771
Length	20
Mature sequence(if miRNA)	61 - UAUUUUUUCGUUGCGAGAUG - 80
Stem-loop(if miRNA)	--                AC     U       AAU     U   UCUCGCAACGAAAAAA  AAAUU GACUGCG   GUAGG U   ||||||||||||||||  ||||| |||||||   |||||   AGAGCGUUGCUUUUUU  UUUAA UUGAUGU   CGUUC A GU                -A     U       ---     A
Stem-loop sequence	UCUCGCAACGAAAAAAACAAAUUUGACUGCGAAUGUAGGUUAACUUGCUGUAGUUUAAUUUAUUUUUUCGUUGCGAGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015756961.1	ncRNA:20   GUAGAGCGUUGCUUUUUUAU   1   ||||||||||||||||||*| targets:1188   CAUCUCGCAACGAAAAAAAA   1207 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347194 (LOC4347194), mRNA	uncharacterized LOC4347194(LOC4347194)	coding protein	psRNATarget
AK110839.1	ncRNA:20   GUAGAGCGUUGCUUUUUUAU   1   ||||||||||||||||||*| targets:1190   CAUCUCGCAACGAAAAAAAA   1209 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-172-B04, full insert sequence	NA	coding protein	psRNATarget
XM_015792915.1	ncRNA:20   GUAGAGCGUUGCUUUUUUAU   1   ||||||||||||||||||*| targets:1902   CAUCUCGCAACGAAAAAAAA   1921 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B1 (LOC4345896), transcript variant X1, mRNA	UDP-glycosyltransferase 89B1(LOC4345896)	coding protein	psRNATarget
XM_015791653.1	ncRNA:20   GUAGAGCGUUGCUUUUUUAU   1   |||||=||||||||||||*| targets:633   CAUCUUGCAACGAAAAAACA   652 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group FAD-dependent urate hydroxylase (LOC4343274), transcript variant X1, mRNA	FAD-dependent urate hydroxylase(LOC4343274)	coding protein	psRNATarget
XM_015791654.1	ncRNA:20   GUAGAGCGUUGCUUUUUUAU   1   |||||=||||||||||||*| targets:633   CAUCUUGCAACGAAAAAACA   652 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group FAD-dependent urate hydroxylase (LOC4343274), transcript variant X2, mRNA	FAD-dependent urate hydroxylase(LOC4343274)	coding protein	psRNATarget
LQ236483.1	ncRNA:20   GUAGAGCGUUGCUUUUUUAU   1   =|||||||||||||||||** targets:45   UAUCUCGCAACGAAAAAAAC   64 Target Full Sequence	2.5	Sequence 2478 from Patent EP2985353	NA	coding protein	psRNATarget
HI404353.1	ncRNA:20   GUAGAGCGUUGCUUUUUUAU   1   =|||||||||||||||||** targets:45   UAUCUCGCAACGAAAAAAAC   64 Target Full Sequence	2.5	Sequence 2478 from Patent EP2074227	NA	coding protein	psRNATarget
JB164814.1	ncRNA:20   GUAGAGCGUUGCUUUUUUAU   1   =|||||||||||||||||** targets:45   UAUCUCGCAACGAAAAAAAC   64 Target Full Sequence	2.5	Sequence 2478 from Patent EP2559767	NA	coding protein	psRNATarget