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BaseInfo

ncRNA ID	novel_osa_miR2272
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:841184-841340 [-]
Reference genome	IRGSP-1.0
Source	SRR1849771;SRR2040385;SRR2040394;SRR2040408
Length	24
Mature sequence(if miRNA)	1 - UCUCGAGGUACUUUUUGUUGGACC - 24
Stem-loop(if miRNA)	--              A         C                    AC                      UGG  AU   UCCAACAAAAAGUA CUCGAGGUA CGGUACUUCACGGUACCAAA  GUUUUCGAUCGUUGGAUCUAGC   GC  G   |||||||||||||| ||||||||| ||||||||||||||||||||  ||||||||||||||||||||||   ||  A   AGGUUGUUUUUCAU GAGCUCUAU GCCAUGAAGUGCCGUGGUUU  CAAAGGCUAGCAAUCUAGAUUG   CG  C CC              G         C                    AA                      UUA  GG
Stem-loop sequence	UCCAACAAAAAGUAACUCGAGGUACCGGUACUUCACGGUACCAAAACGUUUUCGAUCGUUGGAUCUAGCUGGGCAUGACGGGCAUUGUUAGAUCUAACGAUCGGAAACAAUUUGGUGCCGUGAAGUACCGCUAUCUCGAGGUACUUUUUGUUGGACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235663.1	ncRNA:24   CCAGGUUGUUUUUCAUGGAGCUCU   1   |||||||||||||||||||||||= targets:9   GGUCCAACAAAAAGUACCUCGAGG   32 Target Full Sequence	1.0	Sequence 1658 from Patent EP2985353	NA	coding protein	psRNATarget
JB163994.1	ncRNA:24   CCAGGUUGUUUUUCAUGGAGCUCU   1   |||||||||||||||||||||||= targets:9   GGUCCAACAAAAAGUACCUCGAGG   32 Target Full Sequence	1.0	Sequence 1658 from Patent EP2559767	NA	coding protein	psRNATarget
HI403533.1	ncRNA:24   CCAGGUUGUUUUUCAUGGAGCUCU   1   |||||||||||||||||||||||= targets:9   GGUCCAACAAAAAGUACCUCGAGG   32 Target Full Sequence	1.0	Sequence 1658 from Patent EP2074227	NA	coding protein	psRNATarget
AK107667.1	ncRNA:24   CCAGGUUGUUUUUCAUGGAGCUCU   1   |||||||||||||*|||||||||| targets:1054   GGUCCAACAAAAAAUACCUCGAGA   1077 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-131-H04, full insert sequence	NA	coding protein	psRNATarget
XM_015755204.1	ncRNA:24   CCAGGUUGUUUUUCAUGGAGCUCU   1   |||||||||||||*|||||||||| targets:1101   GGUCCAACAAAAAAUACCUCGAGA   1124 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347453 (LOC4347453), mRNA	uncharacterized LOC4347453(LOC4347453)	coding protein	psRNATarget
XM_015786123.1	ncRNA:24   CCAGGUUGUUUUUCAUGGAGCUCU   1   ||||||||||||||||*||||||= targets:619   GGUCCAACAAAAAGUAACUCGAGG   642 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA	uncharacterized LOC4340617(LOC4340617)	coding protein	psRNATarget
AK287529.1	ncRNA:24   CCAGGUUGUUUUUCAUGGAGCUCU   1   ||||||||||||||||*||||||= targets:130   GGUCCAACAAAAAGUAACUCGAGG   153 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK240791.1	ncRNA:24   CCAGGUUGUUUUUCAUGGAGCUCU   1   ||||||||||||||||*||||||= targets:130   GGUCCAACAAAAAGUAACUCGAGG   153 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK109957.1	ncRNA:24   CCA--------GGUUGUUUUUCAUGGAGCUCU   1   |||--------|||||||=|||*||||||||| targets:923   GGUGCGUGCUCCCAACAAGAAGGACCUCGAGA   954 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-159-B03, full insert sequence	NA	coding protein	psRNATarget