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BaseInfo

ncRNA ID	novel_osa_miR2271
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:23749312-23749435 [-]
Reference genome	IRGSP-1.0
Source	SRR1849771
Length	23
Mature sequence(if miRNA)	102 - CGGAAAUCGCGAGACGAAUCUUU - 124
Stem-loop(if miRNA)	--                A        A          UU A G      -   ---AA    U   CGGAAAUCGCGAGACG AUCUUUUG GCCUAAUUAG  C U AUUAGC CAU     GUGC A   |||||||||||||||| |||||||| ||||||||||  | | |||||| |||     ||||   GUCUUUGGCGUUCUGC UAGAAAAC CGGAUUAAUU  G A UAAUCG GUA     CAUG C GG                C        C          CG C G      U   CACCC    A
Stem-loop sequence	CGGAAAUCGCGAGACGAAUCUUUUGAGCCUAAUUAGUUCAUGAUUAGCCAUAAGUGCUACAGUACCCCACAUGUGCUAAUGACGGCUUAAUUAGGCCCAAAAGAUCCGUCUUGCGGUUUCUGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK103318.1	ncRNA:23   UUUCUAAGCAGAGCGCUAAAGGC   1   ||||||||||||||||||||||* targets:1162   AAAGAUUCGUCUCGCGAUUUCCA   1184 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033125I08, full insert sequence	NA	coding protein	psRNATarget
AK101179.1	ncRNA:23   UUUCUAAGCAGAGCGCUAAAGGC   1   ||||||||||||||||||||||* targets:2733   AAAGAUUCGUCUCGCGAUUUCCA   2755 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033029D23, full insert sequence	NA	coding protein	psRNATarget
AK288820.1	ncRNA:23   UUUCUAAGCAGAGCGCUAAAGGC   1   ||||||||||||||||||||||* targets:3111   AAAGAUUCGUCUCGCGAUUUCCU   3133 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090073D04, full insert sequence	NA	coding protein	psRNATarget
AK067512.1	ncRNA:23   UUUCUAAGCAGAGCGCUAAAGGC   1   ||||||||||||||||||||||* targets:1196   AAAGAUUCGUCUCGCGAUUUCCA   1218 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence	NA	coding protein	psRNATarget
XM_015776798.1	ncRNA:23   UUUCUAAGCAGAGCGCUAAAGGC   1   |||||||||||||||*||||||* targets:1997   AAAGAUUCGUCUCGCUAUUUCCC   2019 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group U11/U12 small nuclear ribonucleoprotein 65 kDa protein (LOC4332713), transcript variant X1, mRNA	U11/U12 small nuclear ribonucleoprotein 65 kDa protein(LOC4332713)	coding protein	psRNATarget
AK064127.1	ncRNA:23   UUUCUAAGCAGAGCGCUAAAGGC   1   ||||*|||*|||||||||||||* targets:130   AAAGUUUCAUCUCGCGAUUUCCU   152 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-102-E01, full insert sequence	NA	coding protein	psRNATarget
AK071825.1	ncRNA:23   UU-UCUAAGCAGAGCGCUAAAGGC   1   ||-|*||||||||||||=|||||* targets:1404   AAUAAAUUCGUCUCGCGGUUUCCA   1427 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023115H13, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:23   UU-UCUAAGCAGAGCGCUAAAGGC   1   ||-|*||||||||||||||||=|* targets:2459   AAUAAAUUCGUCUCGCGAUUUUCA   2482 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget