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BaseInfo

ncRNA ID	novel_osa_miR2266
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:26470830-26470880 [+]
Reference genome	IRGSP-1.0
Source	SRR1849771;SRR2040394;SRR2040397;SRR3123650;SRR1738239
Length	24
Mature sequence(if miRNA)	1 - UUAUUUCACCCGGGACUAAAGUCC - 24
Stem-loop(if miRNA)	--    UU  C         -A       UUAU  CA CCGGGACUA  AGUCC   ||||  || |||||||||  ||||C   AAUA  GU GGCCCUGGU  UUAGA CC    -U  U         GC
Stem-loop sequence	UUAUUUCACCCGGGACUAAAGUCCCAGAUUCGUGGUCCCGGUUGUAUAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288796.1	ncRNA:24   CCU-GAAAUCAGGGCCCACUUUAUU   1   |||-||||||||||||||||||||| targets:1790   GGAUCUUUAGUCCCGGGUGAAAUAA   1814 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:24   CCU---GAAAUCAGGGCCCACUUUAUU   1   ||=---||||||||||||||||||||| targets:1327   GGGUAUCUUUAGUCCCGGGUGAAAUAA   1353 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK066662.1	ncRNA:24   CCUGAAAUCAGGGCCCACUUUAUU   1   ***||||||||||||||||||||| targets:616   CAUCUUUAGUCCCGGGUGAAAUAA   639 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013071A17, full insert sequence	NA	coding protein	psRNATarget
XM_015778766.1	ncRNA:24   CCUGAAAUCAGGGCCCACUUUAUU   1   ***||||||||||||||||||||| targets:1020   UAUCUUUAGUCCCGGGUGAAAUAA   1043 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group jacalin-related lectin 9 (LOC4335495), mRNA	jacalin-related lectin 9(LOC4335495)	coding protein	psRNATarget
AK288462.1	ncRNA:24   CCUGAAAUCAGGGCCCACUUUAUU   1   ***|||||||=||||||||||||| targets:2854   CAUCUUUAGUUCCGGGUGAAAUAA   2877 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090036C06, full insert sequence	NA	coding protein	psRNATarget
AK065811.1	ncRNA:24   CCUGAAAUCAGGGCCCACUUUAUU   1   ***||||||||||||*|||||||| targets:1872   CAUCUUUAGUCCCGGUUGAAAUAA   1895 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget
AK065634.1	ncRNA:24   CCUGAAAUCAGGGCCCACUUUAUU   1   **==|||||||||||*|||||||| targets:1900   CAGUUUUAGUCCCGGUUGAAAUAA   1923 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013034I10, full insert sequence	NA	coding protein	psRNATarget
CT837755.1	ncRNA:24   CCUGAAAUCAGGGCCCACUUUAUU   1   ***=|||||||||||*|||||||| targets:1904   CAUUUUUAGUCCCGGUUGAAAUAA   1927 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA248M21, full insert sequence	NA	coding protein	psRNATarget