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BaseInfo

ncRNA ID	novel_osa_miR2262
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:5096496-5096658 [-]
Reference genome	IRGSP-1.0
Source	SRR1849771;SRR2040384;SRR2040385;SRR2040386;SRR2040388;SRR2040393;SRR2040395;SRR2040398;SRR2040401
Length	24
Mature sequence(if miRNA)	140 - AGUUAACUAUUGUAUGAAUGGGCU - 163
Stem-loop(if miRNA)	--   U               G            A C    GUCGU  U        CAAC    A                U   AGU AACUAUUGUAUGAAU GGCUAUUAUAUU G UAUA     UG UUUGGAGC    GGUU GUUAUACUAUUAAACU A   ||| ||||||||||||||| |||||||||||| | ||||     || ||||||||    |||| |||||||||||||||| G   UCG UUGAUAACAUACUUA UCGAUAAUGUAA C AUAU     AC AAACCUCG    UCAA CGAUAUGAUAAUUUGA C AU   -               A            C A    ---AU  U        AUCA    C                A
Stem-loop sequence	AGUUAACUAUUGUAUGAAUGGGCUAUUAUAUUAGCUAUAGUCGUUGUUUUGGAGCCAACGGUUAGUUAUACUAUUAAACUUAGCAAGUUUAAUAGUAUAGCCAACUACUAGCUCCAAAUCAUAUAUAACCAAUGUAAUAGCUAAUUCAUACAAUAGUUGCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK071876.1	ncRNA:24   UCGGGUAAGUAUGUUAUCAAUUGA   1   ||||||||||||=||||||||||| targets:1669   AGCCCAUUCAUAUAAUAGUUAACU   1692 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013040F16, full insert sequence	NA	coding protein	psRNATarget
AK100013.1	ncRNA:24   UCGGGUAAGUAUGUUAUCAAUUGA   1   |||=||||=|||=||||||||||| targets:656   AGCUCAUUUAUAUAAUAGUUAACU   679 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013142C13, full insert sequence	NA	coding protein	psRNATarget
AK242968.1	ncRNA:24   UCGGGUAAGUAUGUUAUCAAUUGA   1   |||=*||||||||||||||||||| targets:277   AGCUAAUUCAUACAAUAGUUAACU   300 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090091F06, full insert sequence	NA	coding protein	psRNATarget
AK068031.1	ncRNA:24   UCGGGUAAGUAUGUUAUCAAUUGA   1   |||=|||||||||||||||||*|| targets:1779   AGCUCAUUCAUACAAUAGUUAUCU   1802 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013130D08, full insert sequence	NA	coding protein	psRNATarget
XM_015764162.1	ncRNA:24   UCGGGUAAGUAUGUUAUCAAUUGA   1   |||=||||=||||||||||||*|| targets:614   AGCUCAUUUAUACAAUAGUUAUCU   637 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group macrophage migration inhibitory factor homolog (LOC4351273), transcript variant X3, mRNA	macrophage migration inhibitory factor homolog(LOC4351273)	coding protein	psRNATarget
AK241681.1	ncRNA:24   UCGGGUAAGUAUGUUAUCAAUUGA   1   |||=||||=|||||||||||||*| targets:1748   AGCUCAUUUAUACAAUAGUUAAAU   1771 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065193N01, full insert sequence	NA	coding protein	psRNATarget
AK063919.1	ncRNA:24   UCGGGUAAGUAUGUUAUCAAUUGA   1   ||||*||||||||||||||||*|| targets:459   AGCCAAUUCAUACAAUAGUUACCU   482 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-123-B07, full insert sequence	NA	coding protein	psRNATarget
XM_015779375.1	ncRNA:24   UCGGGUAAGUAUGUUAUCAAUUGA   1   ||||*||||||||||||||||*|| targets:2478   AGCCAAUUCAUACAAUAGUUAUCU   2501 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g05670, mitochondrial (LOC9271712), mRNA	pentatricopeptide repeat-containing protein At1g05670, mitochondrial(LOC9271712)	coding protein	psRNATarget
AK100685.1	ncRNA:24   UCGGGUAAGUAUGUUAUCAAUUGA   1   ||===||||||||||||||||*|| targets:2881   AGUUUAUUCAUACAAUAGUUAUCU   2904 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023113M24, full insert sequence	NA	coding protein	psRNATarget
AK121267.1	ncRNA:24   UCGGGUAAGUAUGUUAUCAAUUGA   1   |||=|||*|||||||||||||*|| targets:337   AGCUCAUCCAUACAAUAGUUACCU   360 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023105G02, full insert sequence	NA	coding protein	psRNATarget
CT833980.1	ncRNA:24   UCGGGUAAGUAUGUUAUCAAUUGA   1   |||=|||*|||||||||||||*|| targets:377   AGCUCAUCCAUACAAUAGUUACCU   400 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN073L01, full insert sequence	NA	coding protein	psRNATarget
DQ100373.2	ncRNA:24   UCGGGUAAGUAUGUUAUCAAUUGA   1   |||=*||||||||||||||||*|| targets:2569   AGCUGAUUCAUACAAUAGUUACCU   2592 Target Full Sequence	1.5	Oryza sativa Japonica Group stemodene synthase (KS11) mRNA, complete cds	NA	coding protein	psRNATarget
CT834986.1	ncRNA:24   UCGGGUAAGUAUGUUAUCAAUUGA   1   *|=|*|||=||||||||||||*|| targets:25   CGUCAAUUUAUACAAUAGUUACCU   48 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN037L08, full insert sequence	NA	coding protein	psRNATarget