Search result

BaseInfo

ncRNA ID	novel_osa_miR2261
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:13825384-13825461 [-]
Reference genome	IRGSP-1.0
Source	SRR1849771;SRR2040382;SRR2040387;SRR2040390;SRR2040394;SRR2040408;SRR2098557;SRR1298766;SRR2458631;SRR2857729;SRR4407953;SRR4407954;SRR4407956;SRR4407957;SRR4407958;SRR4407959;SRR4407961;SRR5351737;SRR5351738;SRR5351740;SRR1300837;SRR1298758
Length	24
Mature sequence(if miRNA)	1 - AUUUAGUUGAAUUAGAGUGGGUCA - 24
Stem-loop(if miRNA)	--U                              UU  CU    CUCACUCUAGUUCAAUUAAAUGAAUUAAAU  CA  U    ||||||||||||||||||||||||||||||  ||    GGGUGAGAUUAAGUUGAUUUACUUGAUUUG  GU  U ACU                              GG  UU
Stem-loop sequence	UCUCACUCUAGUUCAAUUAAAUGAAUUAAAUUUCACUUUUUUGGGGUUUAGUUCAUUUAGUUGAAUUAGAGUGGGUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242506.1	ncRNA:24   ACUGGGUGAGAUUAAGUUGAUUUA   1   |*||||||*|||=||||||||||| targets:188   UUACCCACACUAGUUCAACUAAAU   211 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J080310A18, full insert sequence	NA	coding protein	psRNATarget
XM_015770644.1	ncRNA:24   ACUGGGUGAGAUUAAGUUGAUUUA   1   |*||||||*|||=||||||||||| targets:3949   UUACCCACACUAGUUCAACUAAAU   3972 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group calcium-transporting ATPase 8, plasma membrane-type (LOC4328480), transcript variant X1, mRNA	calcium-transporting ATPase 8, plasma membrane-type(LOC4328480)	coding protein	psRNATarget
XM_015770645.1	ncRNA:24   ACUGGGUGAGAUUAAGUUGAUUUA   1   |*||||||*|||=||||||||||| targets:3991   UUACCCACACUAGUUCAACUAAAU   4014 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group calcium-transporting ATPase 8, plasma membrane-type (LOC4328480), transcript variant X2, mRNA	calcium-transporting ATPase 8, plasma membrane-type(LOC4328480)	coding protein	psRNATarget