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BaseInfo

ncRNA ID novel_osa_miR2248
Species Oryza sativa
Class miRNA
Genome position Chr1:841180-841344 [-]
Reference genome IRGSP-1.0
Source SRR1555746;SRR1556014
Length 24
Mature sequence(if miRNA) 1 - GAGGUACUUUUUGUUGGACCGGAG - 24
Stem-loop(if miRNA) --                  A         C                    AC                      UGG  AU
  CCGGUCCAACAAAAAGUA CUCGAGGUA CGGUACUUCACGGUACCAAA  GUUUUCGAUCGUUGGAUCUAGC   GC  G
  |||||||||||||||||| ||||||||| ||||||||||||||||||||  ||||||||||||||||||||||   ||  A
  GGCCAGGUUGUUUUUCAU GAGCUCUAU GCCAUGAAGUGCCGUGGUUU  CAAAGGCUAGCAAUCUAGAUUG   CG  C
GA                  G         C                    AA                      UUA  GG
Stem-loop sequence CCGGUCCAACAAAAAGUAACUCGAGGUACCGGUACUUCACGGUACCAAAACGUUUUCGAUCGUUGGAUCUAGCUGGGCAUGACGGGCAUUGUUAGAUCUAACGAUCGGAAACAAUUUGGUGCCGUGAAGUACCGCUAUCUCGAGGUACUUUUUGUUGGACCGGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235663.1
ncRNA:24   GAGGCCAGGUUGUUUUUCAUGGAG   1
  =||=||||||||||||||||||||
targets:5   UUCUGGUCCAACAAAAAGUACCUC   28

0.0 Sequence 1658 from Patent EP2985353 NA coding protein psRNATarget
HI403533.1
ncRNA:24   GAGGCCAGGUUGUUUUUCAUGGAG   1
  =||=||||||||||||||||||||
targets:5   UUCUGGUCCAACAAAAAGUACCUC   28

0.0 Sequence 1658 from Patent EP2074227 NA coding protein psRNATarget
JB163994.1
ncRNA:24   GAGGCCAGGUUGUUUUUCAUGGAG   1
  =||=||||||||||||||||||||
targets:5   UUCUGGUCCAACAAAAAGUACCUC   28

0.0 Sequence 1658 from Patent EP2559767 NA coding protein psRNATarget
AK063705.1
ncRNA:24   GAGGCCAGGUUGUUUUUCAUGGAG   1
  ||=|||||||=|||||||||=|||
targets:479   CUUCGGUCCAGCAAAAAGUAUCUC   502

2.5 Oryza sativa Japonica Group cDNA clone:001-119-H03, full insert sequence NA coding protein psRNATarget
XM_015786123.1
ncRNA:24   GAGGCCAGGUUGUUUUUCAUGGAG   1
  ||||||||||||||||||||*|||
targets:615   CUCCGGUCCAACAAAAAGUAACUC   638

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA uncharacterized LOC4340617(LOC4340617) coding protein psRNATarget
EF626940.1
ncRNA:24   GAGGCCAGGUUGUUUUUCAUGGAG   1
  ||=|||||||=|||||||||=|||
targets:985   CUUCGGUCCAGCAAAAAGUAUCUC   1008

2.5 Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds NA coding protein psRNATarget
AK107667.1
ncRNA:24   GAGGCCAGGUUGUUUUUCAUGGAG   1
  |||||||||||||||||*||||||
targets:1050   CUCCGGUCCAACAAAAAAUACCUC   1073

1.5 Oryza sativa Japonica Group cDNA clone:002-131-H04, full insert sequence NA coding protein psRNATarget
XM_015755204.1
ncRNA:24   GAGGCCAGGUUGUUUUUCAUGGAG   1
  |||||||||||||||||*||||||
targets:1097   CUCCGGUCCAACAAAAAAUACCUC   1120

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347453 (LOC4347453), mRNA uncharacterized LOC4347453(LOC4347453) coding protein psRNATarget
XM_015755547.1
ncRNA:24   GAGGCCAGGUUGUUUUUCAUGGAG   1
  ||=|||||||=|||||||||=|||
targets:1460   CUUCGGUCCAGCAAAAAGUAUCUC   1483

2.5 PREDICTED: Oryza sativa Japonica Group zinc finger protein WIP2 (LOC4347420), mRNA zinc finger protein WIP2(LOC4347420) coding protein psRNATarget
AK287529.1
ncRNA:24   GAGGCCAGGUUGUUUUUCAUGGAG   1
  ||||||||||||||||||||*|||
targets:126   CUCCGGUCCAACAAAAAGUAACUC   149

1.5 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
AK240791.1
ncRNA:24   GAGGCCAGGUUGUUUUUCAUGGAG   1
  ||||||||||||||||||||*|||
targets:126   CUCCGGUCCAACAAAAAGUAACUC   149

1.5 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
AK103106.1
ncRNA:24   GAGGCCAGGUUGUUUUUCAUGGAG   1
  *|=||||||||=||||||||||||
targets:1432   AUUCGGUCCAAUAAAAAGUACCUC   1455

1.5 Oryza sativa Japonica Group cDNA clone:J033118O22, full insert sequence NA coding protein psRNATarget
XM_015765802.1
ncRNA:24   GAGGCCAGGUUGUUUUUCAUGGAG   1
  *|=||||||||=||||||||||||
targets:1431   AUUCGGUCCAAUAAAAAGUACCUC   1454

1.5 PREDICTED: Oryza sativa Japonica Group polygalacturonase (LOC4326679), mRNA polygalacturonase(LOC4326679) coding protein psRNATarget
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