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BaseInfo

ncRNA ID	ath-miR857
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr4:7878185-7878561 [-]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	14 - UUUUGUAUGUUGAAGGUGUAU - 34
Stem-loop(if miRNA)	C        CAA       C             GA      CACCCAAAA     UG     G   G            -     AAUAGUGACUUGUUUUUUUUAAAAUGUUUUUUAAGAAUGUUUUUUCAGCUUUUUAUUUUAUUUUAAACCUAAAGGUAGCGUGACUAUUGUGGAGAAAU UUCGA UCCUACAA   ACUUUCA CAUACAAAAUAAU  AGAAAA         AGGUU  AAUGU UGA GUUAGUCUCAUU UUUAA                                                                                                  A ||||| ||||||||   ||||||| |||||||||||||  ||||||         |||||  ||||| ||| |||||||||||| |||||                                                                                                  A AGGCU AGGAUGUU   UGGAAGU GUAUGUUUUAUUG  UCUUUU         UUUAA  UUACG GCU CAAUUAGAGUAA UAUCU                                                                                                  A      A        AUG       U             AA      -UUUAGAUC     GU     A   G            U     UUUACAGAUAUAAGGCAAAUUUUAUCACUGUAACAAAAAUUUAUAUAUAAAAUUUUGUUGUAGAAUGAUAUUUGGUUUUUAUAAAAAAGAAUACAAAG
Stem-loop sequence	UUCGACUCCUACAACAAACUUUCACCAUACAAAAUAAUGAAGAAAACACCCAAAAAGGUUUGAAUGUGUGAGGUUAGUCUCAUUUUUAAAAUAGUGACUUGUUUUUUUUAAAAUGUUUUUUAAGAAUGUUUUUUCAGCUUUUUAUUUUAUUUUAAACCUAAAGGUAGCGUGACUAUUGUGGAGAAAUAAAGAAACAUAAGAAAAAAUAUUUUUGGUUUAUAGUAAGAUGUUGUUUUAAAAUAUAUAUUUAAAAACAAUGUCACUAUUUUAAACGGAAUAUAGACAUUUUCUAUUAAUGAGAUUAACGUCGAGCAUUUGAAUUUCUAGAUUUUUUUCUAAGUUAUUUUGUAUGUUGAAGGUGUAUUGUAGGAAUCGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT004971.1	ncRNA:21   UAUGUGGAAGUUGUAUGUUUU   1   |*|||||||||||=||||||| targets:81   ACACACCUUCAACGUACAAAA   101 Target Full Sequence	1.5	Arabidopsis thaliana clone U50490 putative laccase (diphenol oxidase) (At3g09220) mRNA, complete cds	NA	coding protein	psRNATarget
AK117639.1	ncRNA:21   UAUGUGGAAGUUGUAUGUUUU   1   |*|||||||||||=||||||| targets:146   ACACACCUUCAACGUACAAAA   166 Target Full Sequence	1.5	Arabidopsis thaliana At3g09220 mRNA for putative laccase, complete cds, clone: RAFL17-29-M06	NA	coding protein	psRNATarget
NM_111756.3	ncRNA:21   UAUGUGGAAGUUGUAUGUUUU   1   |*|||||||||||=||||||| targets:259   ACACACCUUCAACGUACAAAA   279 Target Full Sequence	1.5	Arabidopsis thaliana laccase 7 (LAC7), mRNA	laccase 7(LAC7)	coding protein	psRNATarget
NM_103963.1	ncRNA:21   UAUGUGGAAGUUGUAUGUUUU   1   *||=|*||||||||||||||| targets:251   UUAUAGCUUCAACAUACAAAA   271 Target Full Sequence	2.0	Arabidopsis thaliana aminotransferase-like, mobile domain protein partial mRNA	aminotransferase-like, mobile domain protein(AT1G50820)	coding protein	psRNATarget
NM_001333456.1	ncRNA:21   UAUGUGGAAGUUGUAUGUUUU   1   *||=|*||||||||||||||| targets:251   UUAUAGCUUCAACAUACAAAA   271 Target Full Sequence	2.0	Arabidopsis thaliana aminotransferase-like, mobile domain protein partial mRNA	aminotransferase-like, mobile domain protein(AT1G50820)	coding protein	psRNATarget

Reference

1	PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007).