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BaseInfo

ncRNA ID	novel_osa_miR2235
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:510676-510867 [+]
Reference genome	IRGSP-1.0
Source	SRR1849770;SRR1738209
Length	23
Mature sequence(if miRNA)	170 - AUUAGUUUGACUUUGACCAAAGU - 192
Stem-loop(if miRNA)	--          A        C  A      G  CAA         -AAUA       C    --UCA      GACAAA   AUUAUGAAAAUAUA   UUUGGUCAAA UCAAACUG UU AAGUUU AC   GUUUGUAGA     AUAAUAA AUUU     ACCAAA      UAU              C   |||||||||| |||||||| || |||||| ||   |||||||||     ||||||| ||||     ||||||      |||              U   AAACCAGUUU AGUUUGAU AA UUCAAA UG   CAAACAUCU     UAUUAUU UAAA     UGGUUU      AGU              C UG          C        U  A      A  AUA         GUUUA       A    UUUUG      AAUCAA   AAUUUAACUAUUAA
Stem-loop sequence	UUUGGUCAAAAUCAAACUGCUUAAAGUUUGACCAAGUUUGUAGAAAUAAUAAUAACAUUUUCAACCAAAGACAAAUAUAUUAUGAAAAUAUACUCAAUUAUCAAUUUAAUGAAACUAAUUUGGUGUUUUAAAUAUUAUUAUAUUUGUCUACAAACAUAGUAAAACUUAAAUUAGUUUGACUUUGACCAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288527.1	ncRNA:23   UGAAACCAGUUUCAGUUUGAUUA   1   ||||||||=||||||||||||*| targets:594   ACUUUGGUUAAAGUCAAACUACU   616 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090044J18, full insert sequence	NA	coding protein	psRNATarget
LQ236252.1	ncRNA:23   UGAAACCAGUUUCAGUUUGAUUA   1   ||||*||||||||||||||||*| targets:20   ACUUGGGUCAAAGUCAAACUACU   42 Target Full Sequence	2.5	Sequence 2247 from Patent EP2985353	NA	coding protein	psRNATarget
JB164583.1	ncRNA:23   UGAAACCAGUUUCAGUUUGAUUA   1   ||||*||||||||||||||||*| targets:20   ACUUGGGUCAAAGUCAAACUACU   42 Target Full Sequence	2.5	Sequence 2247 from Patent EP2559767	NA	coding protein	psRNATarget
HI404122.1	ncRNA:23   UGAAACCAGUUUCAGUUUGAUUA   1   ||||*||||||||||||||||*| targets:20   ACUUGGGUCAAAGUCAAACUACU   42 Target Full Sequence	2.5	Sequence 2247 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015773578.1	ncRNA:23   UGAAACCAGUUUCAGUUUGAUUA   1   **||||*||||||||||||||*| targets:289   UAUUUGUUCAAAGUCAAACUACU   311 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative F-box protein At2g02030 (LOC9271925), transcript variant X3, mRNA	putative F-box protein At2g02030(LOC9271925)	coding protein	psRNATarget