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BaseInfo

ncRNA ID	novel_osa_miR2231
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:9944724-9944869 [-]
Reference genome	IRGSP-1.0
Source	SRR1849770
Length	24
Mature sequence(if miRNA)	123 - CAAGUUUGACCAAAUUUAUAGAAA - 146
Stem-loop(if miRNA)	--C             -        A         UACAUCUA         AU   AAUUUGACCAUAACUAA    AAGUUUGACCAAA UUUAUAGA AAAUGUAGC        CAACACCAA  UCA                 A    ||||||||||||| |||||||| |||||||||        |||||||||  |||    UUCGAACUGGUUU AAAUAUUU UUUGUAUCG        GUUGUGGUU  GUU                 U AAA             C        C         UUAUAAAG         -U   UAUAUAAUAUUUUUAUA
Stem-loop sequence	CAAGUUUGACCAAAUUUAUAGAAAAAUGUAGCUACAUCUACAACACCAAAUUCAAAUUUGACCAUAACUAAAUAUAUUUUUAUAAUAUAUUUGUUUGGUGUUGGAAAUAUUGCUAUGUUUCUUUAUAAACUUUGGUCAAGCUUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK065802.1	ncRNA:24   AAAGAUAUUUAAACCAGUUUGAAC   1   |||||||||||||||||||||||* targets:892   UUUCUAUAAAUUUGGUCAAACUUA   915 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013036O21, full insert sequence	NA	coding protein	psRNATarget
CT830174.1	ncRNA:24   AAAGAUAUUUAAACCAGUUUGAAC   1   |||=||||||||||||||||=||* targets:245   UUUUUAUAAAUUUGGUCAAAUUUU   268 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113F22, full insert sequence	NA	coding protein	psRNATarget
XM_015765055.1	ncRNA:24   AAAGAUAUUUAAACCAGUUUGAAC   1   ||||||||||*||||||||||||* targets:2061   UUUCUAUAAACUUGGUCAAACUUA   2084 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group probable mixed-linked glucan synthase 7 (LOC9266650), transcript variant X1, mRNA	probable mixed-linked glucan synthase 7(LOC9266650)	coding protein	psRNATarget
CT835543.1	ncRNA:24   AAAGAUAUUUAAACCAGUUUGAAC   1   ||||||||||*||||||||||||* targets:682   UUUCUAUAAACUUGGUCAAACUUA   705 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA220L16, full insert sequence	NA	coding protein	psRNATarget
XM_015783946.1	ncRNA:24   AAAGAUAUUUAAACCAGUUUGAAC   1   |||=||||||*||||||||||||* targets:3088   UUUUUAUAAAAUUGGUCAAACUUC   3111 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group protein FAR1-RELATED SEQUENCE 5 (LOC4338396), mRNA	protein FAR1-RELATED SEQUENCE 5(LOC4338396)	coding protein	psRNATarget
AK289190.1	ncRNA:24   AAAGAUAUUUAAACCAGUUUGAAC   1   ||||*||||=|||||||||||||* targets:1217   UUUCAAUAAGUUUGGUCAAACUUA   1240 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J100038P15, full insert sequence	NA	coding protein	psRNATarget
AK109666.1	ncRNA:24   AAAGAUAUUUAAACCAGUUUGAAC   1   ||||*||||=|||||||||||||* targets:1260   UUUCAAUAAGUUUGGUCAAACUUA   1283 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-145-A04, full insert sequence	NA	coding protein	psRNATarget
AK120387.1	ncRNA:24   AAAGAUAUUUAAACCAGUUUGAAC   1   |||=||||||*||||||||||||* targets:484   UUUUUAUAAACUUGGUCAAACUUA   507 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013073J05, full insert sequence	NA	coding protein	psRNATarget
AK288518.1	ncRNA:24   AA-AGAUAUUUAAACCAGUUUGAAC   1   ||-||||||||||||*||||||||* targets:448   UUAUCUAUAAAUUUGAUCAAACUUA   472 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090043E02, full insert sequence	NA	coding protein	psRNATarget
XM_015778310.1	ncRNA:24   AAAGAUAUUUAAACCAGUUUGAAC   1   |*|=||||||*||||||||||||| targets:2267   UAUUUAUAAACUUGGUCAAACUUG   2290 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group gamma-glutamyltranspeptidase 1 (LOC4336033), mRNA	gamma-glutamyltranspeptidase 1(LOC4336033)	coding protein	psRNATarget
AK073029.1	ncRNA:24   AAAGAUAUUUAAACCAGUUUGAAC   1   ||||||*|||*||||||||||||* targets:1735   UUUCUACAAACUUGGUCAAACUUU   1758 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023146M03, full insert sequence	NA	coding protein	psRNATarget