Search result

BaseInfo

ncRNA ID novel_osa_miR2225
Species Oryza sativa
Class miRNA
Genome position Chr4:15497031-15497137 [+]
Reference genome IRGSP-1.0
Source SRR1849770
Length 23
Mature sequence(if miRNA) 85 - CGUCACAGAUGAGUGUCAUCGGU - 107
Stem-loop(if miRNA) --       C       C        UC  U  C                AUGC
  CGAUGAC CUCAUCU UGACGGGC  GG GU UGGGCCCGAUUGAGAU    G
  ||||||| ||||||| ||||||||  || || ||||||||||||||||
  GCUACUG GAGUAGA ACUGCUCG  UC UA AUCCGGGCUAACUCUA    A
UG       U       C        UU  -  A                CUGG
Stem-loop sequence CGAUGACCCUCAUCUCUGACGGGCUCGGUGUCUGGGCCCGAUUGAGAUAUGCGAGGUCAUCUCAAUCGGGCCUAAAUCUUUGCUCGUCACAGAUGAGUGUCAUCGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288447.1
ncRNA:23   UGGCUACUGUGAGUAGACACUGC   1
  |||||||||||||||||*|||||
targets:481   ACCGAUGACACUCAUCUAUGACG   503

1.5 Oryza sativa Japonica Group cDNA, clone: J090034N03, full insert sequence NA coding protein psRNATarget