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BaseInfo

ncRNA ID	novel_osa_miR2224
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:9919944-9920151 [+]
Reference genome	IRGSP-1.0
Source	SRR1849770
Length	24
Mature sequence(if miRNA)	1 - GUAGGACCAUAUAUUAAUAGUAUA - 24
Stem-loop(if miRNA)	--  AG     UA   U                     G    A                          A A      C     G    C          AAU   GU  GACCA  UAU AAUAGUAUAGUAAGCAACUGU GUAU AAUUGGCUAUUAUAUUGGCUAUAGAU A UUGGAG UAGUA UGGG UAUACUAUUA   U   ||  |||||  ||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||| | |||||| ||||| |||| ||||||||||   U   UA  CUGGU  AUA UUAUCAUAUCAUUCGUUGAUA CAUA UUAACCGAUAAUGUAACCGAUAUCUA U AACCUC AUCAU GCCC AUAUGAUAAU   G UA  CU     CC   -                     A    C                          C A      A     A    U          CUC
Stem-loop sequence	GUAGGACCAUAUAUUAAUAGUAUAGUAAGCAACUGUGGUAUAAAUUGGCUAUUAUAUUGGCUAUAGAUAAAUUGGAGCUAGUAGUGGGCUAUACUAUUAAAUUUGCUCUAAUAGUAUAUCCCGAUACUAACUCCAAAUCAUCUAUAGCCAAUGUAAUAGCCAAUUCAUACAAUAGUUGCUUACUAUACUAUUAUACCUGGUCUCAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288382.1	ncRNA:24   AUAUGAUAAUUAUAUACCAGGAUG   1   |||||||||||||||||||||*|| targets:251   UAUACUAUUAAUAUAUGGUCCCAC   274 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090026M23, full insert sequence	NA	coding protein	psRNATarget
AK111427.1	ncRNA:24   AUAUGAUAAUUAUAUACCAGGAUG   1   |||||||||||||||||||||*|| targets:24   UAUACUAUUAAUAUAUGGUCCCAC   47 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-182-H04, full insert sequence	NA	coding protein	psRNATarget
XM_015791232.1	ncRNA:24   AUAUGAUAAUUAUAUACCAGGAUG   1   |||||||||||||||||||||*|| targets:1084   UAUACUAUUAAUAUAUGGUCCCAC   1107 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107275924 (LOC107275924), transcript variant X1, mRNA	uncharacterized LOC107275924(LOC107275924)	coding protein	psRNATarget
AK288203.1	ncRNA:24   AUAUGAUAAUUAUAUACCAGGAUG   1   ||||||||||=||||||||||*|| targets:1221   UAUACUAUUAGUAUAUGGUCCCAC   1244 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence	NA	coding protein	psRNATarget
AK064501.1	ncRNA:24   AUAUGAUAAUUAUAUACCAGGAUG   1   |=|||||||||||||||||||*|| targets:1364   UGUACUAUUAAUAUAUGGUCCCAC   1387 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-111-D05, full insert sequence	NA	coding protein	psRNATarget
AK119265.1	ncRNA:24   AUAUGAUAAUUAUAUACCAGGAUG   1   |=||||||||=||||||||||*|| targets:2617   UGUACUAUUAGUAUAUGGUCCCAC   2640 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-130-A05, full insert sequence	NA	coding protein	psRNATarget
XM_015786224.1	ncRNA:24   AUAUGAUAAUUAUAUACCAGGAUG   1   ||*||||||||||||||||||*|| targets:22   UACACUAUUAAUAUAUGGUCCCAC   45 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group heptahelical transmembrane protein ADIPOR2-like (LOC4341697), mRNA	heptahelical transmembrane protein ADIPOR2-like(LOC4341697)	coding protein	psRNATarget
AK069656.1	ncRNA:24   AUAUGAUAAUUAUAUACCAGGAUG   1   *=*||||||||||||||||=|||* targets:1500   CGCACUAUUAAUAUAUGGUUCUAA   1523 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023029J15, full insert sequence	NA	coding protein	psRNATarget