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BaseInfo

ncRNA ID	novel_osa_miR2218
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:2663460-2663511 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR2098822;SRR1298766;SRR1556014;SRR4407958;SRR4407960
Length	24
Mature sequence(if miRNA)	29 - UCUGGUUUUGUGGUUGGAGGAUGA - 52
Stem-loop(if miRNA)	--   G       G      GG  GA   UCU GUUUUGU GUUGGA  AU  U   ||| ||||||| ||||||  ||   GGA UAAAACA UAGCCU  UG  U GG   G       G      AA  UU
Stem-loop sequence	UCUGGUUUUGUGGUUGGAGGAUGAUUUUGUAAUCCGAUGACAAAAUGAGGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015792930.1	ncRNA:24   AGUAGGAGGUUGGUGUUUUGGUCU   1   ||||||||*||||||||||||||| targets:236   UCAUCCUCGAACCACAAAACCAGA   259 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270959 (LOC9270959), mRNA	uncharacterized LOC9270959(LOC9270959)	coding protein	psRNATarget
AK288390.1	ncRNA:24   AGUAGGAGG--UUGGUGUUUUGGUCU   1   |=|||||||--||||||||||||||| targets:866   UUAUCCUCCUGAACCACAAAACCAGA   891 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090027G18, full insert sequence	NA	coding protein	psRNATarget
AK120395.1	ncRNA:24   AGUAGGAGGUUGGUGUUUUGGUCU   1   ||=|||*||||||||||||||||| targets:1334   UCGUCCCCCAACCACAAAACCAGA   1357 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013075G01, full insert sequence	NA	coding protein	psRNATarget
LQ236671.1	ncRNA:24   AGUAGGAGGUUGGUGUUUUGGUCU   1   *=|||||||||||||||||||=|= targets:36   AUAUCCUCCAACCACAAAACCGGG   59 Target Full Sequence	2.5	Sequence 2666 from Patent EP2985353	NA	coding protein	psRNATarget
JB165002.1	ncRNA:24   AGUAGGAGGUUGGUGUUUUGGUCU   1   *=|||||||||||||||||||=|= targets:36   AUAUCCUCCAACCACAAAACCGGG   59 Target Full Sequence	2.5	Sequence 2666 from Patent EP2559767	NA	coding protein	psRNATarget
HI404541.1	ncRNA:24   AGUAGGAGGUUGGUGUUUUGGUCU   1   *=|||||||||||||||||||=|= targets:36   AUAUCCUCCAACCACAAAACCGGG   59 Target Full Sequence	2.5	Sequence 2666 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015760536.1	ncRNA:24   AGUAGGAGGUUGGUGUUUUGGUCU   1   ||=|=*|||||||||||||||||| targets:79   UCGUUGUCCAACCACAAAACCAGA   102 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278312 (LOC107278312), mRNA	uncharacterized LOC107278312(LOC107278312)	coding protein	psRNATarget
AK288162.1	ncRNA:24   AGUAGGAGGUUGGUGUUUUGGUCU   1   ||=|||||||*||=|||||||||| targets:2609   UCGUCCUCCAUCCGCAAAACCAGA   2632 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090001P20, full insert sequence	NA	coding protein	psRNATarget
AK242927.1	ncRNA:24   AGUAGGAGGUUGGUGUUUUGGUCU   1   **||||*||||||||||||||||| targets:1194   AAAUCCCCCAACCACAAAACCAGA   1217 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090085H14, full insert sequence	NA	coding protein	psRNATarget
XM_015773830.1	ncRNA:24   AGUAGGAGGUUGGUGUUUUGGUCU   1   **||||*||||||||||||||||| targets:1188   AAAUCCCCCAACCACAAAACCAGA   1211 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270791 (LOC9270791), mRNA	uncharacterized LOC9270791(LOC9270791)	coding protein	psRNATarget
XM_015756606.1	ncRNA:24   AGUAGGAGGUUGGUGUUUUGGUCU   1   *|=|||||*||||=|||||||||| targets:1375   ACGUCCUCGAACCGCAAAACCAGA   1398 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group PRELI domain containing protein 3A-like (LOC107278595), mRNA	PRELI domain containing protein 3A-like(LOC107278595)	coding protein	psRNATarget
AK111525.1	ncRNA:24   AGUAGGAGG-UUGGUGUUUUGGUCU   1   |=|*||||=-||||||||||||||| targets:841   UUACCCUCUUAACCACAAAACCAGA   865 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013022M11, full insert sequence	NA	coding protein	psRNATarget
XM_015786532.1	ncRNA:24   AGUAGGAGGUUGGUGUUUUGGUCU   1   *==|||*|||||=||||||||||| targets:257   AUGUCCCCCAACUACAAAACCAGA   280 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pistil-specific extensin-like protein (LOC4340900), mRNA	pistil-specific extensin-like protein(LOC4340900)	coding protein	psRNATarget
XM_015792164.1	ncRNA:24   AGUAGGAGGUUGGUGUUUUGGUCU   1   *|||||**|||||||||||||||| targets:548   CCAUCCCACAACCACAAAACCAGA   571 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group WAS/WASL-interacting protein family member 1 (LOC9271891), mRNA	WAS/WASL-interacting protein family member 1(LOC9271891)	coding protein	psRNATarget
AK289042.1	ncRNA:24   AGU-AGGAGGUUGGUGUUUUGGUCU   1   |=|-|||*==||||||||||||||| targets:1818   UUAGUCCCUUAACCACAAAACCAGA   1842 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090092D10, full insert sequence	NA	coding protein	psRNATarget