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BaseInfo

ncRNA ID	novel_osa_miR2216
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:33031191-33031248 [+]
Reference genome	IRGSP-1.0
Source	SRR1849770;SRR3123648;SRR1738235
Length	24
Mature sequence(if miRNA)	1 - ACGAAUUACCCCCCGAACUAUCGU - 24
Stem-loop(if miRNA)	--              G       G -  U   ACGAAUUACCCCCC AACUAUC U GA A   |||||||||||||| ||||||| | ||   UGCUUAAUGGGGGG UUGAUAG G CU G CA              -       G G  U
Stem-loop sequence	ACGAAUUACCCCCCGAACUAUCGUGAUAGUUCGGGGAUAGUUGGGGGGUAAUUCGUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288175.1	ncRNA:24   UGCUAUCAAGCCCCCCAUUAAGCA   1   =||||||||||||||||||||||| targets:2876   GCGAUAGUUCGGGGGGUAAUUCGU   2899 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090004I12, full insert sequence	NA	coding protein	psRNATarget
AK289069.1	ncRNA:24   UGCUAUCAAGCCCC-CCAUUAAGCA   1   =|||||||||||||-|||||||||| targets:1770   GCGAUAGUUCGGGGUGGUAAUUCGU   1794 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090094F19, full insert sequence	NA	coding protein	psRNATarget
XM_015787187.1	ncRNA:24   UGCUAUCAAGCCCCCCAUUAAGCA   1   =|||||||||||||||||*||||| targets:1176   GCGAUAGUUCGGGGGGUAUUUCGU   1199 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281343 (LOC107281343), mRNA	uncharacterized LOC107281343(LOC107281343)	coding protein	psRNATarget
AK100194.1	ncRNA:24   UGCUAUCAAGCCCCCCAUUAAGCA   1   =|||||||||*||||||||||||| targets:1309   GCGAUAGUUCAGGGGGUAAUUCGU   1332 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023036O10, full insert sequence	NA	coding protein	psRNATarget
XM_015775476.1	ncRNA:24   UGCUAUCAAGCCCCCCAUUAAGCA   1   *=*=|=||||*||||||||||||* targets:1   UUUGUGGUUCAGGGGGUAAUUCGG   24 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4334179 (LOC4334179), transcript variant X3, mRNA	uncharacterized LOC4334179(LOC4334179)	coding protein	psRNATarget
XM_015775474.1	ncRNA:24   UGCUAUCAAGCCCCCCAUUAAGCA   1   *=*=|=||||*||||||||||||* targets:1   UUUGUGGUUCAGGGGGUAAUUCGG   24 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4334179 (LOC4334179), transcript variant X1, mRNA	uncharacterized LOC4334179(LOC4334179)	coding protein	psRNATarget
AK120550.1	ncRNA:24   UGCUAUCAAGCCCCCCAUUAAGCA   1   *=*=|=|||||||||||||||||* targets:1238   UUUGUGGUUCGGGGGGUAAUUCGG   1261 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013130B09, full insert sequence	NA	coding protein	psRNATarget
AK120031.1	ncRNA:24   UGCUAUCAAGCCCCCCAUUAAGCA   1   |=*||||||||*|||||||||||| targets:2388   AUAAUAGUUCGAGGGGUAAUUCGU   2411 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-186-D08, full insert sequence	NA	coding protein	psRNATarget
AK242753.1	ncRNA:24   UGCUAUCAAG-CCCCCCAUUAAGCA   1   *|*=|=||||-|||||||||||||| targets:963   UCUGUGGUUCAGGGGGGUAAUUCGU   987 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090050L01, full insert sequence	NA	coding protein	psRNATarget
AK288747.1	ncRNA:24   UGCUAUCAAGCCCCCCAUUAAGCA   1   *|*|||||||*|||*||||||||| targets:966   CCAAUAGUUCAGGGAGUAAUUCGU   989 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090064L01, full insert sequence	NA	coding protein	psRNATarget
AK107200.1	ncRNA:24   UGCUAUCAAGCCCCCCAUUAAGCA   1   *|||-|*||*|||||||||||||| targets:945   UCGA-AUUUAGGGGGGUAAUUCGU   967 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-125-B02, full insert sequence	NA	coding protein	psRNATarget
XM_015794841.1	ncRNA:24   UGCUAUCAAGCCCCCCAUUAAGCA   1   *|||-|*||*|||||||||||||| targets:1332   UCGA-AUUUAGGGGGGUAAUUCGU   1354 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344709 (LOC4344709), mRNA	uncharacterized LOC4344709(LOC4344709)	coding protein	psRNATarget
XM_015775475.1	ncRNA:24   UGCUAUCAAGCCCCCCAUUAAGCA   1   *=*=|=||||*||||||||||||* targets:18   UUUGUGGUUCAGGGGGUAAUUCGG   41 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4334179 (LOC4334179), transcript variant X2, mRNA	uncharacterized LOC4334179(LOC4334179)	coding protein	psRNATarget