Search result

BaseInfo

ncRNA ID	novel_osa_miR2213
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:8987053-8987223 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR2857728;SRR2857730;SRR2857734;SRR2857735;SRR3123645;SRR3123648;SRR1556014;SRR4407775;SRR1738226;SRR1738235;SRR1738237;SRR1738241
Length	24
Mature sequence(if miRNA)	1 - UUUUUAUUUGUAACGUUUGACCAC - 24
Stem-loop(if miRNA)	-     A                   CG C        UU       C    ----AUAAAAAACGAAAAG   UGCUUCAAGUACG  UUUUU UUUGUAACGUUUGACCACU  U UUAUUCAA  UUUUUUG AAAU                   UUG             G  ||||| |||||||||||||||||||  | ||||||||  ||||||| ||||                   |||             U  AAAAA AAACAUUGCAAACUGGUGA  A AAUAAGUU  AAAAAAU UUUA                   CUG             A U     C                   AU A        UU       -    AUAAUAAAUAAAAUAAACA   AACGAAAUAAUAG
Stem-loop sequence	UUUUUAUUUGUAACGUUUGACCACUCGUCUUAUUCAAUUUUUUUUGCAAAUAUAAAAAACGAAAAGUUGUGCUUCAAGUACGGUAGAUAAUAAAGCAAGUCACAAAUAAAAUAAAUAAUAAUUUUAAAAAAUUUUGAAUAAAAUAAGUGGUCAAACGUUACAAACAAAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403666.1	ncRNA:24   CACCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||||*||||| targets:151   GUGGUCAAACGUUACAAACAAAAA   174 Target Full Sequence	1.5	Sequence 1791 from Patent EP2074227	NA	coding protein	psRNATarget
JB164127.1	ncRNA:24   CACCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||||*||||| targets:151   GUGGUCAAACGUUACAAACAAAAA   174 Target Full Sequence	1.5	Sequence 1791 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235796.1	ncRNA:24   CACCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||||*||||| targets:151   GUGGUCAAACGUUACAAACAAAAA   174 Target Full Sequence	1.5	Sequence 1791 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235858.1	ncRNA:24   CACCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||||*||||| targets:157   GUGGUCAAACGUUACAAACAAAAA   180 Target Full Sequence	1.5	Sequence 1853 from Patent EP2985353	NA	coding protein	psRNATarget
HI403728.1	ncRNA:24   CACCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||||*||||| targets:157   GUGGUCAAACGUUACAAACAAAAA   180 Target Full Sequence	1.5	Sequence 1853 from Patent EP2074227	NA	coding protein	psRNATarget
JB164189.1	ncRNA:24   CACCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||||*||||| targets:157   GUGGUCAAACGUUACAAACAAAAA   180 Target Full Sequence	1.5	Sequence 1853 from Patent EP2559767	NA	coding protein	psRNATarget
CT831424.1	ncRNA:24   CACCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||||*||||| targets:717   GUGGUCAAACGUUACAAACAAAAA   740 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038D01, full insert sequence	NA	coding protein	psRNATarget
AK107988.1	ncRNA:24   CACCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||||*||||| targets:719   GUGGUCAAACGUUACAAACAAAAA   742 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-135-F03, full insert sequence	NA	coding protein	psRNATarget
XM_015779114.1	ncRNA:24   CACCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||||*||||| targets:757   GUGGUCAAACGUUACAAACAAAAA   780 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326202 (LOC4326202), mRNA	uncharacterized LOC4326202(LOC4326202)	coding protein	psRNATarget
XM_015780608.1	ncRNA:24   CACCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||||*||||| targets:1785   GUGGUCAAACGUUACAAACAAAAA   1808 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group amino acid permease 3 (LOC4336246), mRNA	amino acid permease 3(LOC4336246)	coding protein	psRNATarget
AK288465.1	ncRNA:24   CACCAGUUUGCAAUGUUUAUUUUU   1   ||||||||||||||||||*||||| targets:828   GUGGUCAAACGUUACAAACAAAAA   851 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090036M08, full insert sequence	NA	coding protein	psRNATarget
LQ236139.1	ncRNA:24   CACCAGUUUGCAAUGUUUAUUUUU   1   *|||||||||||||||||*||||| targets:154   AUGGUCAAACGUUACAAACAAAAA   177 Target Full Sequence	1.5	Sequence 2134 from Patent EP2985353	NA	coding protein	psRNATarget
JB164470.1	ncRNA:24   CACCAGUUUGCAAUGUUUAUUUUU   1   *|||||||||||||||||*||||| targets:154   AUGGUCAAACGUUACAAACAAAAA   177 Target Full Sequence	1.5	Sequence 2134 from Patent EP2559767	NA	coding protein	psRNATarget
HI404009.1	ncRNA:24   CACCAGUUUGCAAUGUUUAUUUUU   1   *|||||||||||||||||*||||| targets:154   AUGGUCAAACGUUACAAACAAAAA   177 Target Full Sequence	1.5	Sequence 2134 from Patent EP2074227	NA	coding protein	psRNATarget
AK109584.1	ncRNA:24   CACCAGUUUGCAAUGUUUAUUUUU   1   *|||||||||*||||||||||||| targets:1114   AUGGUCAAACAUUACAAAUAAAAA   1137 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-137-A10, full insert sequence	NA	coding protein	psRNATarget